Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1915 ATGAATAAGATCAGCAACTTGAGTTGTGTTAGGAGCTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAACTGTGTGGATCTAAACAGTGCCCCGGTTGTGGTCACAAATTTGAAGGGAAGCCGGACTGGTTAGGTCTACCAGCGGGAGTGAAGTTTGATCCAACAGACCAAGAACTCATAGAACATCTTGAAGCCAAAATAGAGGCAAAGAATATGAAATCACACCCTCTCATAGATGAGTTCATTCCCACTATTGAAGGAGAAGATGGGATCTGTTACACCCATCCTGAGAAACTTCCAGGAGTGACAAGAGATGGCTTAAGCAGACACTTCTTCCACAGGCCCTCAAAGGCATACACAACAGGAACACGAAAGAGGAGAAAGATTCAAAACGAATGCGACTTGCAAGGAGGGGAAACCCGGTGGCACAAGACAGGTAAAACCAGACCCGTGATGGTGAATGGGAAACAAAAGGGTTACAAGAAAATTCTAGTGCTATACACCAACTTCGGGAAGAACAGAAAACCCGAAAAGACCAACTGGGTGATGCACCAGTACCATATGGGCCAGCACGAGGAAGAGAAAGAGGGAGAGCTTGTGGTGTCAAAGATATTCTACCAGACACAACCGAGGCAATGCAATTGGTCAGATAGAAGTGCCACAACCGGTGAAGGAAGTGGAGAACAACAACCTAACAACAATAATGGAAGAAGAGACAGTGGAAGTGGCAGCTGTTCTTCTTCTAAGGAAATTGTTACTCACAGAGATGAAATGTCTGCTGTTGTTGGGGTCCCTCCCATAACAACCTTCAACACTTCCTTGGACATTCAACAACTCAAATCCAACCATTTTGGTTTCATCCCATTCAGAAAAGGCTTCGATGAGGTTGGAATAGGAGAAGCCTCCACAGCAAGAGAAGTGCAAGCATCAGGGTCATGCAATGAAGTACATGAACGGCATGTAGCACATCATCATCAACAACAACAACAAAATCAGCATGCGCACCAACAAATTGCAACCACAGCCTTCCATATCAGTAGTCCTTCGCTTCCAATCTCCACCATCATCTCTCCTCCACCCTTTCACCATGCATCCATCATCCTAGACGACAACTCGTACCATGTCTCCAGGATAATGCTCCAAAATGAAAATTTCCAGCAACAGCAGCAACAACATCATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGGTGCACTTCAACTGATATCAAAGCGGAGTCATCCATTACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTACTGGCCAGACCCTGGCAACATGCAGGATCATCGTGAGTAG 1347 0.4558 MNKISNLSCVRSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKIEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGYKKILVLYTNFGKNRKPEKTNWVMHQYHMGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEQQPNNNNGRRDSGSGSCSSSKEIVTHRDEMSAVVGVPPITTFNTSLDIQQLKSNHFGFIPFRKGFDEVGIGEASTAREVQASGSCNEVHERHVAHHHQQQQQNQHAHQQIATTAFHISSPSLPISTIISPPPFHHASIILDDNSYHVSRIMLQNENFQQQQQQHHKLGGRSASGLEELIMGCTSTDIKAESSITNPQEAEWLKYSSYWPDPGNMQDHRE* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1915 448 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Gso5g1915 448 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 430 IPR044799 GO:0003700
Gso5g1915 448 MobiDBLite consensus disorder prediction 215 253 - -
Gso5g1915 448 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Gso5g1915 448 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Gso5g1915 448 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 430 - -
Gso5g1915 448 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Gso5g1915 448 MobiDBLite consensus disorder prediction 215 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1915 Gso-Chr5 42315986 42321364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1915 14 437 NAC Transcription Factor Family AT5G56620 53.728 2.87e-136 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso5g1915 NAM 1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1915 - - gmx:100794811 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1915 5 42315986 42321364 Gso8g0270 8 2560847 2566359 GST