Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1909 ATGATGCTTGGGGAGACCCACCGCCCAAATCCAACCGTACACGTGCCACCGTGGGCGCCGGAGATCTTCTCACCATACACCGGCAATGCCGATTACTCTCCGTACTCCATGCAAGAAGCACTTAGTGCACTTCAGCACTACGAATCCACCGATGCTGAGTCAGACTCGGAGGTTCCGTCTCGGGAACCGGAAGTCCCGGTGGACGCTTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTTCGGAGATGCGCACGTTGCAGGTCGCATGACTGGACCGACTGTCCGTACGCCCACCCCGGCGAGAAGGCACGCCGCCGTGATCCCCGGAAGTACCATTACTCCGGCACGGCTTGCCCCGATTTCCGCAAGGGGAGTTGCAAGAAGGGTGACGCGTGCGAGTACGCGCACGGGGTTTTCGAGTGCTGGCTCCACCCCGCGCGCTACCGCACTCAGCCTTGCAAGGATGGCACCAGTTGTCGCCGCCGCGTGTGTTTCTTCGCGCACACGCCGGATCAACTTAGGGTTTTGCCACAGCAGAGTCCGCGCAGTGCTGATTCCTACGACGGGTCTCCTTTGAGGCACGCGATTGAGTCGTCGTGTGCAAAGTCGCATCCGTTTGTGGCTTCTCCCGGTTCGGCCTCGTCGCCGGTGGAGTCTCCGCCGATGTCGCCGATGACTGTGAGTGTTAATGAGATGGTGGCTTCGCTAAGGAACTTGCAACTGGGGAAGGTGAAGTCCTTGCCTTCTTCGTGGAATGTTATGGGGTCTTCCGGGTTCGGGTCTCCTAGAGGACCCATGATCCGACCCGGATTTTTCAGCCTTCCGACAACGCCGACCCAGGCTCCGACTCGCGGTGGGGTCAACTACTTTGACCAGTGGGATCAGAGTTGTTGCGAGGAGGAGCCTGTTATGGAGAGGGTGGAATCTGGACGAAGCATAAGGGCGAGGATGTTTGAAAAACTGAGCAAAGAGAATCATCTGGACGGGTCGGGTTCCGGATCGAGTCAAATCGGGGTTCCCGATGTTGGGTGGGTTTCGGAGCTTGTCAGTCGCTGA 1062 0.5866 MMLGETHRPNPTVHVPPWAPEIFSPYTGNADYSPYSMQEALSALQHYESTDAESDSEVPSREPEVPVDAYSCDHFRMFEFKVRRCARCRSHDWTDCPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPDQLRVLPQQSPRSADSYDGSPLRHAIESSCAKSHPFVASPGSASSPVESPPMSPMTVSVNEMVASLRNLQLGKVKSLPSSWNVMGSSGFGSPRGPMIRPGFFSLPTTPTQAPTRGGVNYFDQWDQSCCEEEPVMERVESGRSIRARMFEKLSKENHLDGSGSGSSQIGVPDVGWVSELVSR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1909 353 ProSiteProfiles Zinc finger C3H1-type profile. 115 141 IPR000571 GO:0046872
Gso5g1909 353 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 351 - -
Gso5g1909 353 Gene3D - 115 178 - -
Gso5g1909 353 SMART c3hfinal6 114 140 IPR000571 GO:0046872
Gso5g1909 353 SMART c3hfinal6 149 172 IPR000571 GO:0046872
Gso5g1909 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 139 IPR000571 GO:0046872
Gso5g1909 353 PANTHER UNKEMPT FAMILY MEMBER 7 351 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1909 Gso-Chr5 42253978 42255481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1909 63 178 C2H2 Transcription Factor Family AT5G12850 68.966 4.59e-57 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso5g1909 zf-CCCH 7.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1909 - - gmx:100789199 737.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1909 5 42253978 42255481 Gso8g0265 8 2492864 2494384 GST