Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1908 ATGAGATTTACAAGTAAAATTAATATTTTAGATAGAATGCTTTTTGTTTTGCTTGTTCATTCCTTATATCAACAAGTGAAAATGCTAGCTGTGGTTTTTGGGGTTAGGTGGTCCCTTATAGCTGCTCAGCTGCCTGGGAGAACAGACAATGATGTGAAAAACCATTGGAACACTAAGTTAAAGAAAATGTTTTTGGCAGCAAACACCAATGCCACTGGCAATACTGTTTTCTCAACTCCCACTTCTCAGCCTCAAGTTGAAGACTGCAGTGTCTTTGATGATCATGAGAACTCAGCTGAGTATCATGTCTTGGGTTTGGAGCAAACACCATTGCCTTTAGGATCAGATGTTTCAGGTCTTGGAAGCAGTTGTAGTGTACCACTATCCAATGAAGCAGTTTCAGCTTCCTTGGTAAAAGAGGAGAATGAGAATGGGACCCAATGGTTTGGTGAAGATGAATCATTTTTGCTTGATTTTGTGTATGAGGATAACGGGTTTGTTTCTCTAGAAAATAGCAGCGAAGTTGCCCCATCATTTGGCTCTCTCTATGCTCCAAACACAACAGAAAAGAGAAAGAGAGACAATTAA 588 0.3963 MRFTSKINILDRMLFVLLVHSLYQQVKMLAVVFGVRWSLIAAQLPGRTDNDVKNHWNTKLKKMFLAANTNATGNTVFSTPTSQPQVEDCSVFDDHENSAEYHVLGLEQTPLPLGSDVSGLGSSCSVPLSNEAVSASLVKEENENGTQWFGEDESFLLDFVYEDNGFVSLENSSEVAPSFGSLYAPNTTEKRKRDN* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1908 195 ProSiteProfiles Myb-like domain profile. 22 60 IPR001005 -
Gso5g1908 195 Gene3D - 15 85 - -
Gso5g1908 195 MobiDBLite consensus disorder prediction 174 195 - -
Gso5g1908 195 CDD SANT 36 60 IPR001005 -
Gso5g1908 195 PANTHER TRANSCRIPTION FACTOR RAX3 26 122 - -
Gso5g1908 195 SUPERFAMILY Homeodomain-like 28 65 IPR009057 -
Gso5g1908 195 Pfam Myb-like DNA-binding domain 23 58 IPR001005 -
Gso5g1908 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 64 IPR017930 -
Gso5g1908 195 PANTHER OS09G0431300 PROTEIN 26 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1908 Gso-Chr5 42244568 42246601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1908 29 65 MYB Transcription Factor Family AT5G65790 72.973 3.05e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso5g1908 Myb_DNA-binding 4.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1908 K09422 - gmx:100797458 391.734