Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1900 ATGTGGCAGTATATATTGGAGACCGGCGTTTACCCGCGAGAAGTGGAGATCCTCAAAGAGCTAAGAAATGCAACTGCAGAGCATCCTCTGGGCTTCATGGGTGCTGCACCTGATTCGGGGCAGCTAATGGCGTTTCTCTTGAAGCTTTTAAATGCTAAAAAGACAATTGAAGTGAGAGTTTTTACTGGATACTCTCTTCTCCTCACTGCACTCACCATTCCTAATGATGGAAAGATTATTGCTATGGATCTAGACAGAAAAGCTTATGAGATAGGACTACCATTCATTAAAAAGCCTGGTCCAGAACACAAGATTGACTTCATAGAGTCTCAAGCTTTACCAGTCCTTGATAAACTCCTAGAAGATGTGACGGAGTCATTATCTGCAGACGTCTTCGCTGATATGATATGA 411 0.4282 MWQYILETGVYPREVEILKELRNATAEHPLGFMGAAPDSGQLMAFLLKLLNAKKTIEVRVFTGYSLLLTALTIPNDGKIIAMDLDRKAYEIGLPFIKKPGPEHKIDFIESQALPVLDKLLEDVTESLSADVFADMI* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1900 136 Gene3D Vaccinia Virus protein VP39 1 134 IPR029063 -
Gso5g1900 136 PANTHER PROTEIN, PUTATIVE-RELATED 3 130 - -
Gso5g1900 136 PANTHER O-METHYLTRANSFERASE-RELATED 3 130 - -
Gso5g1900 136 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 1 136 IPR002935 GO:0008171
Gso5g1900 136 Pfam O-methyltransferase 10 125 IPR002935 GO:0008171
Gso5g1900 136 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 3 123 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1900 Gso-Chr5 42198415 42199425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1900 1 122 Monolignol Biosynthesis Gene Families AT4G26220 68.033 7.37e-57 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1900 K00588 - gmx:100795229 214.542