Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1894 ATGAGCAGCCAAAAGGGTCGTCATGAGCATGAAGAAGAGATGGGTACCTCAGAAAGCACCGGTAAAGTGGTTGTGGTTGCAGTGAAAGCTTCTAGAGATATTTCAAGGACTGCTTTGGTGTGGGCTTTGACTCATGTTGTTCAGCCAGGGGATTGCATTAAGCTGTTGGTTCTCATTCCGACTCTTTCCTCAAACAAGAGGGTATGGGGACTTTCAAGATTTACTACTGATTGTGCCTCGAGTCATTGGAGATCCAGTTTAGGAACCATTTCAGATCAGAAAGAAGTTATTACAAATTCCTGTTCTCAATTAGTACTTCAACTCCATGATTTTTATGATCCAGAGAAGATAAAAATCAGAGTGAAGATTCTTTCTGGTTCTTTATGCGGAGCTGTTTCTGCTGAAGCCAAGAGAGTCCAGTCAAGCTGGGTTATATTGGACAAAAAATTGAAGCATGAAAAGAAATACTGCATGGAACAGCTGCATTGCAATATTGTAATTATGAAGCGGTCTAGGCCAAAGATTCTGCGCTTGAATTTGAACAGTTCGTCTAAGATGGAACTAAACATGGCTTGTCCATTGACACTTACAAAGAACTTCAAAGACAACTCTGAACATGCAGATATAATTAGAGGTCCAGCTGTTACTCCTGCTAGTAGTCCTGAGCAAGGGTCACCACTACTGACTGCAACTGATATTGGAACATCATCCATATCAAGCTCAGATCCTGCAACTTCACCATTTTTCCGCTCTGACAATAATGAAAGACAAAGGAGAGGTTTTACCTTTGTTCATGAGGGACTGACAAACCTGGAGGATATCGAGTCTGACTCTGAGAGCGAAAAGCTAAGTATGTCATCCAAGAGTTCATATTTTCAGCCATGGATTGCAAATGTAATTTGCATGGATGGTGATTTCTCAAGACATGAGAACAACATGCAAAGATCCAGTGACAAGACTTTAGCTACTGCCTATGAAGCTTTGCTTCAGAAATTCTCAAAGTTGGATCAAGATCCTATCCTAGGAATGCTTAACTGTAAACTTGATGTGAACTTAAGCAAAAGTGTTAGAGAAGCAATTTCACTGGCTAAAACTTCAGCCCCTGGACCTCCCCCATTGTGCTCCATTTGTCAGCACAAGGCCCCTGTGTTTGGCAATCCACCAAGGTGGTTTACATTTTCTGAATTGCAACTTGCCACAGGTGGTTTTTCACAAGCAAACTTCTTGGCAGAAGGTGGTTTTGGTTCTGTACACCGCGGTGTCCTGCCTGATGGGCAAGTCATTGCTGTCAAGCAGTACAAATTAGCCAGTACTCAAGGAGACAAAGAGTTTTGCTCAGAAGTAGAGGTCTTAAGCTGTGCACAACATCGCAATGTTGTGATGTTAATTGGGTTCTGTGTGGATGATGGAAGAAGATTGCTAGTTTATGAATACATCTGCAATGGCTCTCTGGATTCTCATCTCTACAGACGAAAGCAGAATGTACTGGAATGGTCTGCTAGGCAAAAGATTGCAGTTGGAGCAGCTCGTGGCTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGTATTGTGCACCGTGACATGCGGCCAAACAATATTCTTCTCACTCATGATTTCGAGGCTTTAGTAGGAGATTTTGGACTAGCAAGGTGGCAGCCAGATGGAGACATGGGTGTGGAAACCAGGGTGATAGGAACATTTGGGTATTTGGCGCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGACGTGTACTCGTTTGGGATAGTATTACTGGAGCTTGTCACAGGACGGAAAGCAGTAGATATAAATCGGCCCAAGGGCCAGCAATGCCTAAGTGAATGGGCACGCCCATTGCTTGAAAAACAAGCCATTTACAAACTAGTAGATCCGAGCTTAAGGAACTGCTATGTTGATCAAGAGGTTTATCGCATGCTGCAATGTTCCTCTTTGTGCATCGGACGCGATCCTCATTTAAGGCCACGAATGTCTCAGGTGCTCAGGATGCTGGAAGGTGACATTCTCATCTGA 2040 0.4324 MSSQKGRHEHEEEMGTSESTGKVVVVAVKASRDISRTALVWALTHVVQPGDCIKLLVLIPTLSSNKRVWGLSRFTTDCASSHWRSSLGTISDQKEVITNSCSQLVLQLHDFYDPEKIKIRVKILSGSLCGAVSAEAKRVQSSWVILDKKLKHEKKYCMEQLHCNIVIMKRSRPKILRLNLNSSSKMELNMACPLTLTKNFKDNSEHADIIRGPAVTPASSPEQGSPLLTATDIGTSSISSSDPATSPFFRSDNNERQRRGFTFVHEGLTNLEDIESDSESEKLSMSSKSSYFQPWIANVICMDGDFSRHENNMQRSSDKTLATAYEALLQKFSKLDQDPILGMLNCKLDVNLSKSVREAISLAKTSAPGPPPLCSICQHKAPVFGNPPRWFTFSELQLATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVDDGRRLLVYEYICNGSLDSHLYRRKQNVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAVDINRPKGQQCLSEWARPLLEKQAIYKLVDPSLRNCYVDQEVYRMLQCSSLCIGRDPHLRPRMSQVLRMLEGDILI* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1894 679 PANTHER OS01G0253100 PROTEIN 19 679 IPR045271 GO:0004714|GO:0006468
Gso5g1894 679 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672|GO:0006468
Gso5g1894 679 ProSiteProfiles Protein kinase domain profile. 403 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1894 679 MobiDBLite consensus disorder prediction 218 251 - -
Gso5g1894 679 MobiDBLite consensus disorder prediction 213 252 - -
Gso5g1894 679 Gene3D Transferase(Phosphotransferase) domain 1 479 677 - -
Gso5g1894 679 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 19 679 - -
Gso5g1894 679 CDD STKc_IRAK 409 675 - -
Gso5g1894 679 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Gso5g1894 679 SUPERFAMILY Protein kinase-like (PK-like) 383 674 IPR011009 -
Gso5g1894 679 Pfam Protein tyrosine and serine/threonine kinase 407 673 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1894 Gso-Chr5 42136358 42140808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1894 378 669 Trihelix Transcription Factor Family AT1G68690 52.027 1.54e-99 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gso5g1894 PK_Tyr_Ser-Thr 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1894 - - gmx:100305413 1348.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1894 5 42136358 42140808 Gso8g0251 8 2379204 2383317 GST