Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1893 ATGGGGAGGAAGTGCTCACATTGTGGAACCATAGGCCATAATTCAAGGACTTGCACATCTTTGAGAGGCACATCTTTCGTTGGACTTCGCCTCTTCGGCGTGCAATTAGACACTACTTGTGTTACCATCAAGAAAAGCTTTAGCATGGACTCCTTACCCTCATCATCATCTTCCTCATTCTCTTCATCAAGAATAACCATTGATGAAAATTCTGACCGAACCTCTTTTGGGTATCTCTCAGATGGTCTCTTAGCTCGAGCCCAAGAGAGGAAGAAAGGAGTGCCATGGACAGAAGAGGAACACAGAATATTCCTTGTTGGACTTGAGAAGCTGGGAAAGGGTGACTGGAGGGGAATCTCTAGAAACTTTGTGACTACAAGAACCCCAACACAAGTGGCAAGCCATGCTCAAAAGTACTTTCTTCGATTGGCAACTATGGATAAGAAGAAGCGACGTTCAAGTCTCTTTGACTTGGTTGGTAGCAACAAAGCAGGTTCTAATTCAGTTTCGGCTCATCAAAATGATGAGTCTAAATGTGAAGTTAAGAATAATAATGATGATGCCACTTTGTCGTTGCTAGGGCGTATAACCTACTTTCAACAAGAAACCAAATCATCAGATTATAAGCAAGAAACATTTGATAATTGCTCTAATCAAAGTCAACCAAGTGAAGAACATCAACCTGCAGTTCTTAATCTGGATCTCACTCTCGCAGCCCCCAAGGCAAAGACCCTGCAGGAACAAAACAAACCATCCCCTTCTGCTCCATTTCTGCCTGGGCCAATTATCAGCGTGACTTAA 801 0.4307 MGRKCSHCGTIGHNSRTCTSLRGTSFVGLRLFGVQLDTTCVTIKKSFSMDSLPSSSSSSFSSSRITIDENSDRTSFGYLSDGLLARAQERKKGVPWTEEEHRIFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKYFLRLATMDKKKRRSSLFDLVGSNKAGSNSVSAHQNDESKCEVKNNNDDATLSLLGRITYFQQETKSSDYKQETFDNCSNQSQPSEEHQPAVLNLDLTLAAPKAKTLQEQNKPSPSAPFLPGPIISVT* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1893 266 Gene3D - 94 146 - -
Gso5g1893 266 SUPERFAMILY Homeodomain-like 89 144 IPR009057 -
Gso5g1893 266 PANTHER TRANSCRIPTION FACTOR KUA1 1 254 - -
Gso5g1893 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 144 IPR017930 -
Gso5g1893 266 Pfam Myb-like DNA-binding domain 95 140 IPR001005 -
Gso5g1893 266 SMART sant 92 142 IPR001005 -
Gso5g1893 266 CDD SANT 95 140 IPR001005 -
Gso5g1893 266 MobiDBLite consensus disorder prediction 241 266 - -
Gso5g1893 266 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE ISOFORM X1 1 254 - -
Gso5g1893 266 ProSiteProfiles SANT domain profile. 96 144 IPR017884 -
Gso5g1893 266 ProSiteProfiles Myb-like domain profile. 88 140 IPR001005 -
Gso5g1893 266 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 91 142 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1893 Gso-Chr5 42124841 42126392 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso5g1893 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1893 - - gmx:778093 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1893 5 42124841 42126392 Gso8g0250 8 2368017 2369688 GST