Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1884 ATGGCGTTATCCCTTCCCACCCACCCTTCTCCCACCGTTAATCCTCTCCGACGATCCCCAAAACCCACCCTCCGCCGCGTCAACCACCGCGTTTGCGTGGCCAGCGCCGCCACTCCCCTCCTCCAAGTCAATGACTTGAGGGCCAAGATTGTCGAATCCAACGTTGACATTCTCCACGGCGTTAACCTCACCATCAACCAAGGAGAGGTCCACGCCATCATGGGGAAAAACGGTTCCGGCAAAAGCACTTTCGCCAAGGTTCTTGTGGGGCACCCAGATTATGAAGTAACCGGAGGCAGTGTTGTTTTCAAGGGGGAGAATTTGCTTGAGATGGAACCTGAAGAAAGGTCTCTTGCGGGTCTCTTCATGAGTTTTCAATCCCCTGTTGAAATCCCCGGTGTTTCCATTGATCTGTTTCTCGCCATGGCCTACAATGCTCGAATGAAAAAACTTGGTCGAGATGAGGTTGGACCAATCGAGTTTTTACCTTACCTGATGGAGAAGCTTCAGCTTGTTAACATGAAGCCTGACTTTCTCAATAGGAATGTGAACCAAGGGTTTAGTGGCGGTGAACGCAAGCGCAATGAAATCTTGCAGCTTGCGGTTTTGGGGGCGGACTTGGCTATTTTGGATGAAATTGATTCTGGTTTGGATGTTGATGCGCTCAGGGATGTTGCGAATGCAGTTAATAGGATTCTCACCCCAGAAAAGTCCTTGTTGATGATAACTCATTATAGACGGATTCTGGATCTTTTGAATCCTACACATGTCCATGTTATGGACAAAGGGAAAATTGCAAGGACAGGCGACATATCAGTGGTAGAAGCTATTGAGTCAGATGGATATGAAGCAGTCTCTGCTTTAACATAA 870 0.4828 MALSLPTHPSPTVNPLRRSPKPTLRRVNHRVCVASAATPLLQVNDLRAKIVESNVDILHGVNLTINQGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLEMEPEERSLAGLFMSFQSPVEIPGVSIDLFLAMAYNARMKKLGRDEVGPIEFLPYLMEKLQLVNMKPDFLNRNVNQGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNRILTPEKSLLMITHYRRILDLLNPTHVHVMDKGKIARTGDISVVEAIESDGYEAVSALT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1884 289 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 287 IPR003439 GO:0005524
Gso5g1884 289 CDD ABC_FeS_Assembly 41 282 IPR010230 GO:0005524
Gso5g1884 289 Gene3D - 40 288 IPR027417 -
Gso5g1884 289 Pfam ABC transporter 58 212 IPR003439 GO:0005524
Gso5g1884 289 TIGRFAM sufC: FeS assembly ATPase SufC 41 284 IPR010230 GO:0005524
Gso5g1884 289 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 31 286 IPR010230 GO:0005524
Gso5g1884 289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 272 IPR027417 -
Gso5g1884 289 MobiDBLite consensus disorder prediction 1 22 - -
Gso5g1884 289 ProSitePatterns ABC transporters family signature. 187 201 IPR017871 GO:0005524
Gso5g1884 289 SMART AAA_5 67 264 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1884 Gso-Chr5 42036959 42040503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1884 54 272 Calmodulin-binding Proteins AT2G36910 22.128 2.72e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1884 K09013 - gmx:100798005 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1884 5 42036959 42040503 Gso8g0239 8 2261581 2263699 GST