Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1883 ATGGAAGACTATGATAGTTACATAGCACAGAGTGATAGAGGTGAAAATGGAGTGATAGTGGCATCGCGTGCTTGCCCGCGCGACGAATTTCGCCCCCGTGGTGGAAAAGTACTGTCGCGAGTTGCTGCTGTTGCGGCTGCAAGAAATGGTTCTTCGACTTCAAGTTACGATATAGCTGTGACGAGGAATATTAAGAAAAAGCAAAAGCGTAAGGGTCTTCGGGAACTGTTTACAACTGATTACATTGTGAACAGCGTGTTACGGAAGGATGGTCCTACACTTGGTCAGGAATTTGATTTTCTTCCTTCAGGACCCAAATATTTCACTTCTGCTTGTCAAGAGGACCAAGGATCCTTCAAAAGGAGGAAGGTTCCCAACAGTGCATTTCAAAGTCTCGCCAATTGTAATATGAAAGCACCTGTGAAGAAACATGGCATTGGCAAAGGCCTGATGACAGTTTGGAGGGAAACAAATCCTGATGCTGGAGACCTTCCATTTGGTTTTGGCGTTTCTGGCCAAGAAGTTCCTCTAATCTCAAATTCTATAGGACAGAAACCAGTCCGTAAGAACAACAGGTCATGGAAAACCGTAAACAGGAATGGAATGCCAAAAAATAAAATGCAGAATAAGAGAAATAAGTCGCAGGACAAGAGGAAACTTACCATGCAAAGAAGAGTGGGGGAATTGAACCTAAATGTGACTCAGAATCAGTCACCAAAGGAAAAATGTGAACTAGCTTTGGATAGTGCAATATCTGAGGAGGGGGTTGATCGATTTTCAATGTTATTTGATGATGAAGAGCTAGAGCTGAGGGAGTTACAAGAAGGAACCAATCTGTTTATGTGTTCTGATCATCTTGCTGGCAGTGGAATGGTTGGCTGCTCACTTTGTAAAGATGTGCTAGTGAAGTTTCCGCCAGATATTGTCAAGATGAAGAAACCTATCCATTTGCAACCTTGGGACTCGTCTCCGGAAATTGTGAAGAAATTATTTAAGGTTTTCCACTTCATTTATACATATGCTATAATTGTTGATATTTGCCCGTTCACTCTTGATGAGTTTGTTCAAGCATTTCATGATAAGGACTCAATGTTACTTGGCAAGATTCATGTGGCCCTTCTCACACTTCTTCTATCCGACATTGAAGTGGAGATTACTAATGGGTTTTCACCTCATTTAAATAAATCGTGTAACTTTCTTGCATTGCTTCACTCGGTTGAAAGTCAAGAATATTCCCTGGACTTCTGGAGAAGATCTTTAAATTCTCTTACTTGGATTGAAATACTCCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCAAAACAAGGTTCCTTACGTAGAGAGGTCCTTAACAAGGAATTGAATCTTCTTGTAAACTATGGTCTATGCCCTGGCACCTTGAAGAGTGAGTTGTTTAACATCTTGTCAGAGAGAGGAAACATTGGATGCAAAGTAGCTGAGATGGCAAAGTCAATGCAGATTGCTGAATTAAACCTTGCGAGCACAACAGAGGGACTCGAGTCTTTAATATGTTCCACGCTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCAACTGCATACCGATTGCGTATGAGCAGTGTTACGAAGGATGGTGACGAATCTGATTCAGATACAGAGGACTCTGGTAGTGTTGATGATGAATTTAATGTTGCTGATACATGTAGCAGTGGTGATGATTTTGAAAGTGATTCAATAAACTCCAGTAAAAGAAAATTGAAGCGTGCAAACAGTCATAAAAATAATATGCTGAAAGTATACACTGAAATTGATGAGAGCCATCCAGGAGAAGCGTGGTTATTAGGACTGATGGAGAGTGAATATTCAGACTTGAACATTGAAGAAAAATTGAATGCATTGGCATCTTTAACTGATCTTGTTTCATCTGGATCTAGCATCAGGATGAAGGATTCAACCAAAGTTACAGCTGATTGCAATTCTGGCATCCAATTACGAGGGTCTGGAGCTAAAATAAAGAGATCAGCAGTAAAGAAACCTGGGCCACTTTGGAACCAGAAAGTACACTTGAATTCTGATCCCTGTGCAGTTGATTCCTCATCATTAATCTCAAGATTCCATACTCATGAAGCTTCCTTTGGAAAGGGAAAAGTTTCCTTTATTTCACACCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGTCCTTGTAATGTAGATGATCCAGGCCACAGGAGGATATACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTTATTGATACTGAGGAGGCCTTGTGTGCCTTGTTGTCAGTTCTGGATGATAGAGGAAAAAGGGAGGCTCTTCTTATTGAATCTTTGGAAAGGAGACGGACATCACTATGCAGATCTATGTCCAGGATTAATGCTAATAGTACTGGAATGGGTTCTATGTCACATTCTGATCAATCTGAACTGGATATGGTCAAAGATGACAGTTATTCTCCCGCATCTGATGTAGACAACCTGAACCTGACTGAGACTGCAGAAGACTCGCTGCCGTCTGCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGGAGAGGAACAAATTCAAAAATGGATCCGTGTTCAAGAATATGATTCTTGGATTTGGAATTCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAAAAGGTCTTATCTGGACTCTCTTGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCAATCCACATAGCCACATGCAGGGAGAAAGAAGACAGCAATACATTTCCTAATCATAAAGTGCTATCATCACAGATTCAATCACTGAAAGCTGCAGTTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCATGGTTGGTGCTTGGAGGAAATCTGCTCATAAGCTATGGGTAAAACGGCTCAGACGCACCTCAACTTTAGTGGAGCTTTTGCAGGTTCTTACTGATTTTGTTGGTGCCATCAATAAGGATTGGTTGTATCAATGCAAATTTCTGGATGGGGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCCCATACACCATCTGCCCTTGCTCTGTGGTTAGTGAAGTTAGATGCCATAATTGCTCCCTACCTGGACAGAGTCCATCTTCAGAAGAAACAGGGAACCAGTCAACATGGTGCTTGGCGATAG 3249 0.4094 MEDYDSYIAQSDRGENGVIVASRACPRDEFRPRGGKVLSRVAAVAAARNGSSTSSYDIAVTRNIKKKQKRKGLRELFTTDYIVNSVLRKDGPTLGQEFDFLPSGPKYFTSACQEDQGSFKRRKVPNSAFQSLANCNMKAPVKKHGIGKGLMTVWRETNPDAGDLPFGFGVSGQEVPLISNSIGQKPVRKNNRSWKTVNRNGMPKNKMQNKRNKSQDKRKLTMQRRVGELNLNVTQNQSPKEKCELALDSAISEEGVDRFSMLFDDEELELRELQEGTNLFMCSDHLAGSGMVGCSLCKDVLVKFPPDIVKMKKPIHLQPWDSSPEIVKKLFKVFHFIYTYAIIVDICPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVEITNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNSLTWIEILRQVLVASGFGSKQGSLRREVLNKELNLLVNYGLCPGTLKSELFNILSERGNIGCKVAEMAKSMQIAELNLASTTEGLESLICSTLSSDITLFEKISSTAYRLRMSSVTKDGDESDSDTEDSGSVDDEFNVADTCSSGDDFESDSINSSKRKLKRANSHKNNMLKVYTEIDESHPGEAWLLGLMESEYSDLNIEEKLNALASLTDLVSSGSSIRMKDSTKVTADCNSGIQLRGSGAKIKRSAVKKPGPLWNQKVHLNSDPCAVDSSSLISRFHTHEASFGKGKVSFISHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRIYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRRTSLCRSMSRINANSTGMGSMSHSDQSELDMVKDDSYSPASDVDNLNLTETAEDSLPSAGAVVIEAGKKGEEQIQKWIRVQEYDSWIWNSFYLDLNVVKYGKRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKEDSNTFPNHKVLSSQIQSLKAAVYAIESVMPEDAMVGAWRKSAHKLWVKRLRRTSTLVELLQVLTDFVGAINKDWLYQCKFLDGVVEEIIASFASMPHTPSALALWLVKLDAIIAPYLDRVHLQKKQGTSQHGAWR* 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1883 1082 Pfam DDT domain 327 380 IPR018501 -
Gso5g1883 1082 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 53 1073 IPR044977 GO:0006357
Gso5g1883 1082 ProSiteProfiles DDT domain profile. 324 383 IPR018501 -
Gso5g1883 1082 MobiDBLite consensus disorder prediction 805 819 - -
Gso5g1883 1082 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 720 793 IPR028941 -
Gso5g1883 1082 PANTHER OS07G0619600 PROTEIN 53 1073 - -
Gso5g1883 1082 SMART testlast3 324 383 IPR018501 -
Gso5g1883 1082 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 603 642 IPR028942 -
Gso5g1883 1082 MobiDBLite consensus disorder prediction 805 827 - -
Gso5g1883 1082 MobiDBLite consensus disorder prediction 535 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1883 Gso-Chr5 42026496 42035663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1883 244 541 Homeobox Transcription Factor Family AT1G28420 31.085 4.96e-40 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gso5g1883 WSD 9.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1883 - - gmx:100802783 2121.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1883 5 42026496 42035663 Gso8g0238 8 2251209 2259878 GST