Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1881 ATGAAGGCGCAACCACCAGACGGTGCCGCCGCCGTCGCACCCAACGCCGGCGAAGGAGGAGAGAAGAAAACCATAAACGCTGAGCTATGGCAAGCTTGTGCGGGGCCGCTTCTCAACCTGCCTTCGCCTGGAACTCACGTCGTTTACTTCCCTCAAGGCCACAGCGAACAGGTAGCAGCGTCTTTGAAGAAAGACGTGGATGCTCAAGTCCCGAACTATACCAATCTCCCCTCCAAGATACCCTGTCTTCTTCACAATGTCACGCTGCATGCAGATCCAGACACGGATGAAGTATATGCTCAGATGACACTTCAGCCGGTTCCTTCTTTTGACACGGATGCGTTGTTAAGATCGGATATCTTTCTCAGGTCGAGTAAGCCACAACCTGAGTTTTTCTGTAAACAACTGACGGCAAGTGATACGAGTACCCATGGAGGTTTCTCTGTACCCCGCCGTGCTGCAGAGAAGATTTTCCCTCCTCTTGATTACTCTGTGCAACCTCCTGCCCAAGAACTTGTAGCCCGGGATTTGCATGATAATGTTTGGAGATTCCGCCATATATATCGTGGACAACCAAAACGACACTTGCTTACGACTGGATGGAGTCTATTTATCGGTGGAAAAAGGCTTTTAGCTGGTGACTCTGTTTTGTTTGTAAGAGATGAAAAGCAGCAGCTTCTTTTGGGTATAAGACGAGCTAATAGGCAACCCTCCAATTTATCATCTTCGGTACTATCAAGTGATAGTATGCACATTGGAGTTCTTGCTGCAGCTGCTCAAGCTGTTGCAAACAATAGTCCCTTCACCGTGTTCTATAATCCTAGGGCTAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAGTACTCCAAGGCAGTGTATAGCCACCATATATCACCTGGTATGCGCTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGATATATGGGTACAATCATAGGTGTCAGTGATCTGGATTCTGTGAGATGGAAAAATTCACTATGGCGTAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGAGGAAAGGCAAAGTAGGGTCTCAGTCTGGGAAATTGAACCTGTGACTACTCCATATTTCATCTGCCCGCCTCCTTTCTTCAGATCCAAGATACCTAGACTACTGGGAATGCCAGATGATGAGCCTGATTTCAACAACCTTTTCAAGAGTACAGTTCCCTGGCTTGGTGATGATATGTGCGTAAAGGGTCCCCAAGCTCTCCCTGGCTTGAGCTTAGTTCAATGGATGAACATACAGCAAAATCCTGCTCTTGCTAGCTCATTGCAGCCAAATTGTGGGCCTTCCATGTCTGGATTGGTTCTGCAAAATCTTCCTGGTGCAGATATTGCAAATCCGCTGGGGTTTTCTACCTCACAAATCTCTCAATCAAACAATGTATCTGTCGATGCTCAGAATATACTTCAGACTTCCCAGCAACTCGATCACATTCAGAAGCCACCATGCCCATCCAGTGCATTGGGAGCAGTCACACAGCCGCTGCAGCAGTTGGGTGATATCACTCAACAACCAAGGAACTTGACAAATCAAACTTTACCACACGATCAAGCTCACACCCAACTTCTGAATCCCCAGAGAGTTGTCCAAACTAACAATATTCATCAACAGCAACAATCGTCCATTCAAAAGCAACAACTGCTTAGAAGCTTGTCTCAGAACCGAGCTCAGAAGCATCAACAAACTACATTGGGTTTGAATGAACGGCAAATTGTGTTTCAATCCCCTATGCCCGATCATTTTAATCAACAATTACAAATGTCTGACAATCAGGTTCGGTTTCAGTTGTTACAGAAGCTTCAACAGCAACAACAGACACTCTTGGCACAGCAGTCTGCATTGCAGCAGCCTGCTCTAATTCAAATCCAAGACCAGCAGAGGCAGCTTTTAGACGTTGCAAACAACTCTAGTTCCCCAATTCCTGGTCAAGTACTGGAAAATCTTCCTACGCTTCAAAACTCACTCCCTGAGGCTAATTCTATCACCCATCAGATAACAATGCCAAGTAGCCAGAAAAATTTTCATTACTCTCATCTATCTCAGCAACCTGCCTTGCTGTCTGAAATGTCTGGCCATGTTGGACTTCCCCCTACAGTTACAACCAATCCACTTTCTGCTTCTGGTGGAAGTATACTGACTGGCGTGGGGCAATCGGTAATTACTGATGATGTTCCATCTTGTTCCACTTCACCTTCCACAAATAACCGTGCCAGTGTACTTCCTCCGGTGGTAAGTTCCCAGATCCATAGGAGCACAACAATAGGGGATGACATGGCTCAGTCTGCTGTCACGATCTCGGGTGCAAGTACCCTAGAAACCATGTCATCTAATGCAAACATTGTCCAGCCGAAGTATGAAGTAAAGGCTTCTTTAAATATTTCAAAAAATCAGAATCAAGGGAATGTTGCCCCTCAGACATACTTGAATGGTGTTGTTCAGACAGACTATTTGGATTCATCATCTTCTACAACATCACTTTACCATTTTCGGAGTGATACTCATATGCATCAGAATACCAACCCATTTTCTTACAATCCACAGTTGGTTTATTGTAGAGACAATAGTCAAAATGTTGAAGTTCAGGCTGATGCTAGGAACAATGTTCTGATTGGCAATAACGTTAATGGCCAAATGGGAATGCCATCGAATCTAGATTCTCTTTTAACCAAAGGCACAGTGGGGCTGGGGAAGGAGTTGTCTAATAAATTTGCCTCCGGAGGCTTGCTTAGAGACTTAGAAAATAACAAAGGTGTTCCGCCAGAAATTTCATCTTCAATGGTTTCACAGACATTTGAAGTCCCTGATATGAGCTTCAATTCAATTGATTCTACAATAGATGGTAGTAGCTTCTTGAATAGGGGTCCATGGGATCTGCCACCACCACCTCCACCACAACAACAACAGGTATATAAACGTGGAGCTGTGGGAAGGTCCATAGACATAACACGATATTCAGGTTACGAGGACCTTAAACAGGATCTGGCTCTTAGGTTTGGTATTGAGGGACAGCTGGAGGATCTACAAAGGATTGGTTGGAAACTTGTATATGTAGATCACGAGAATGATGTTTTACTTGTGGGAGATGACCCTTGGGAGGAGTTTGTTAACTGTGTCCGCTGCATTAAAATACTTTCTCCTCAAGAAGTTCAACAAATGAGCTTGGATGGAGATTTTGGCAATGGTGGCCTTCCATATCCAGCAGGCAGCAGCTCTGATGGTGGGAATGCTTAA 3273 0.4485 MKAQPPDGAAAVAPNAGEGGEKKTINAELWQACAGPLLNLPSPGTHVVYFPQGHSEQVAASLKKDVDAQVPNYTNLPSKIPCLLHNVTLHADPDTDEVYAQMTLQPVPSFDTDALLRSDIFLRSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSVQPPAQELVARDLHDNVWRFRHIYRGQPKRHLLTTGWSLFIGGKRLLAGDSVLFVRDEKQQLLLGIRRANRQPSNLSSSVLSSDSMHIGVLAAAAQAVANNSPFTVFYNPRASPSEFVIPLAKYSKAVYSHHISPGMRFRMMFETEDSGTRRYMGTIIGVSDLDSVRWKNSLWRNLQVGWDESTAEERQSRVSVWEIEPVTTPYFICPPPFFRSKIPRLLGMPDDEPDFNNLFKSTVPWLGDDMCVKGPQALPGLSLVQWMNIQQNPALASSLQPNCGPSMSGLVLQNLPGADIANPLGFSTSQISQSNNVSVDAQNILQTSQQLDHIQKPPCPSSALGAVTQPLQQLGDITQQPRNLTNQTLPHDQAHTQLLNPQRVVQTNNIHQQQQSSIQKQQLLRSLSQNRAQKHQQTTLGLNERQIVFQSPMPDHFNQQLQMSDNQVRFQLLQKLQQQQQTLLAQQSALQQPALIQIQDQQRQLLDVANNSSSPIPGQVLENLPTLQNSLPEANSITHQITMPSSQKNFHYSHLSQQPALLSEMSGHVGLPPTVTTNPLSASGGSILTGVGQSVITDDVPSCSTSPSTNNRASVLPPVVSSQIHRSTTIGDDMAQSAVTISGASTLETMSSNANIVQPKYEVKASLNISKNQNQGNVAPQTYLNGVVQTDYLDSSSSTTSLYHFRSDTHMHQNTNPFSYNPQLVYCRDNSQNVEVQADARNNVLIGNNVNGQMGMPSNLDSLLTKGTVGLGKELSNKFASGGLLRDLENNKGVPPEISSSMVSQTFEVPDMSFNSIDSTIDGSSFLNRGPWDLPPPPPPQQQQVYKRGAVGRSIDITRYSGYEDLKQDLALRFGIEGQLEDLQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPYPAGSSSDGGNA* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1881 1090 SUPERFAMILY DNA-binding pseudobarrel domain 121 260 IPR015300 -
Gso5g1881 1090 SUPERFAMILY CAD & PB1 domains 997 1056 - -
Gso5g1881 1090 Pfam AUX/IAA family 1021 1063 IPR033389 -
Gso5g1881 1090 ProSiteProfiles PB1 domain profile. 978 1062 IPR000270 GO:0005515
Gso5g1881 1090 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Gso5g1881 1090 Gene3D - 130 233 IPR015300 -
Gso5g1881 1090 PANTHER AUXIN RESPONSE FACTOR 15 1075 - -
Gso5g1881 1090 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Gso5g1881 1090 Pfam Auxin response factor 258 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso5g1881 1090 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 1075 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso5g1881 1090 SMART B3_2 132 234 IPR003340 GO:0003677
Gso5g1881 1090 Gene3D - 296 367 - -
Gso5g1881 1090 CDD B3_DNA 131 223 IPR003340 GO:0003677
Gso5g1881 1090 Gene3D - 979 1067 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1881 Gso-Chr5 42003678 42010567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1881 14 489 B3 DNA Binding Superfamily AT1G19220 66.597 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso5g1881 B3 1.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1881 - - gmx:100803302 2066.97