Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1878 ATGGCACTAAGTGGTTGGCATTGTTGGACAATACTATTCATCTACCTATCGTCACATTTCACTGTTGTTCCTTCTTTTGGAGCTTCTGACTCTGAATTGCTCCTTCAAGTCAAGGAGAACTTGCAAACCCACAACGATGAATTGTCCTCGTGGAACGCTTCGATTCCTCCTTGTTCTGGTGCTCGTTCCAATTGGCGCGGGGTTCTCTGCCACGAAGGAAAAGTGTGGGGCGTGAAGCTTGAGAACATGGGCCTCAAAGGGGTCATTGATGTGGACTCTCTCAAAGGCTTGCCTTATCTTAGAACGTTGAGTTTCATGAACAATGATTTCGAGGGTGCATGGCCTGAAATTGACCACCTCATTGGTCTAAAGTCTATTTATCTTTCCAACAACAAGTTTTCTGGGGAGATTCCTTTTAGAACTTTTGAAGGGTTGAAGTGGTTGAAGAAGGTTCATTTGTCCAACAACCATTTCACCGGTGCTGTTCCAACTTCGCTCGTATTGTTGCCGAGGCTCATAGAGTTGAGGTTGGAGGGAAACAAATTCAATGGTCCCATTCCACGTTTTACTCGCCATAACAAATTGAAATCATTTAGCGTTGCTAACAATGAGTTGAGTGGCGAAATTCCTGCCTCCCTTAGAAGGATGCCAGTTTCTTCCTTTTCTGGTAATGAAAGGTTATGTGGAGGCCCGTTGGGAGCATGTAATTCGAAGCCCTCGACTTTGAGCATTGTTGTGGCTGTGGTGGTTGTTTGTGTGGCAGTGATTATGATTGCAGCAGTAGTATTATTCATCCTTCACAGAAGAAGAAATCAAGGGTCAGCAACGTCCGTGGAGAATCCACCCTCTGGGTGTAACAAAGGACGTTTGAGGGAAGTGGGTAGTGAAAGTATGAGGTCAACAAGATCAATAAGCTCCAACCACAGCAGAAGAGGGGACCACACGAAGCTATCTTTTCTGAGAGATGATAGGCAGAGGTTTGATTTGCATGAGTTGCTGAGAGCCTCTGCAGAGATTTTGGGCAGTGGCTGTTTTAGCTCTTCTTACAAGGCTGCTTTGTTGAATGGCCCAACAATAGTGGTGAAGAGGTTCAAGCAGATGAACAATGTGGGGAAGGAAGAGTTTCAAGAGCACATGAGAAGGCTAGGGAGGTTGAGCCATCCTAACTTGCTTCCTCCTCTGGCTTACTATTATAGAAAGGAGGAGAAGCTCGTCGTCACTGACTATGTTCAGAATGGCAGCCTAGCTGTTCGCCTTCACGGACACCAATCCATTGGAGAACCAAGCCTTGATTGGCCAATCCGGTTGAAGATAGTGAAAGGCATAGCAAAAGGTCTTGAATATCTATACAAGGACATGCCAAGCCTAATTGCACCCCATGGAAATCTCAAGTCCTCTAATGTTCTCTTGACTGAATCATTCGAGCCACTCCTCACAGACTATGGCTTAGTCCCAGTGATAAACCAGGATCTGGCTCAGGACATCATGGTGATATACAAGTCTCCTGAGTACTTGCAACAAGGAAGAATTACAAAGAAGACTGATGTGTGGTGCCTTGGAATACTAATTCTTGAGATTCTAACTGGGAAGTTCCCTGCTAACTTCTTGCAACAAGGTAAAGGGAGTGAGGTGAGTTTGGCAAGTTGGATTCATTCAGTTGTCCCAGAAGAGTGGACAAGTGCTGTGTTTGATCAAGAAATGGGGGCAACAAAGAACAGTGAGGGAGAGATGGGGAAGCTTCTCAAGATTGCCTTGAATTGTTGTGAAGGGGATGTGGATAAGAGGTGGGATTTGAAAGAAGCAGTTGAGAAAATCCAGGAGGTCAAGCAGAGGGATCATGATCAAGAGAATTTTTTTACTTCTTATGCTAGTGAAGCAGACATGAAGTCTTCAACTTGA 1899 0.4502 MALSGWHCWTILFIYLSSHFTVVPSFGASDSELLLQVKENLQTHNDELSSWNASIPPCSGARSNWRGVLCHEGKVWGVKLENMGLKGVIDVDSLKGLPYLRTLSFMNNDFEGAWPEIDHLIGLKSIYLSNNKFSGEIPFRTFEGLKWLKKVHLSNNHFTGAVPTSLVLLPRLIELRLEGNKFNGPIPRFTRHNKLKSFSVANNELSGEIPASLRRMPVSSFSGNERLCGGPLGACNSKPSTLSIVVAVVVVCVAVIMIAAVVLFILHRRRNQGSATSVENPPSGCNKGRLREVGSESMRSTRSISSNHSRRGDHTKLSFLRDDRQRFDLHELLRASAEILGSGCFSSSYKAALLNGPTIVVKRFKQMNNVGKEEFQEHMRRLGRLSHPNLLPPLAYYYRKEEKLVVTDYVQNGSLAVRLHGHQSIGEPSLDWPIRLKIVKGIAKGLEYLYKDMPSLIAPHGNLKSSNVLLTESFEPLLTDYGLVPVINQDLAQDIMVIYKSPEYLQQGRITKKTDVWCLGILILEILTGKFPANFLQQGKGSEVSLASWIHSVVPEEWTSAVFDQEMGATKNSEGEMGKLLKIALNCCEGDVDKRWDLKEAVEKIQEVKQRDHDQENFFTSYASEADMKSST* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1878 632 MobiDBLite consensus disorder prediction 274 315 - -
Gso5g1878 632 Gene3D Phosphorylase Kinase; domain 1 299 409 - -
Gso5g1878 632 Gene3D Transferase(Phosphotransferase) domain 1 410 628 - -
Gso5g1878 632 Gene3D Ribonuclease Inhibitor 27 191 IPR032675 -
Gso5g1878 632 Pfam Leucine rich repeat N-terminal domain 29 70 IPR013210 -
Gso5g1878 632 Pfam Protein tyrosine and serine/threonine kinase 338 604 IPR001245 GO:0004672|GO:0006468
Gso5g1878 632 Pfam Leucine rich repeat 122 182 IPR001611 GO:0005515
Gso5g1878 632 ProSiteProfiles Protein kinase domain profile. 334 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1878 632 SUPERFAMILY Protein kinase-like (PK-like) 338 611 IPR011009 -
Gso5g1878 632 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 622 - -
Gso5g1878 632 SUPERFAMILY L domain-like 54 217 - -
Gso5g1878 632 PANTHER LRR RECEPTOR-LIKE KINASE 7 622 - -
Gso5g1878 632 Gene3D Ribonuclease Inhibitor 192 235 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1878 Gso-Chr5 41969950 41973242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1878 20 631 Receptor kinase-like Gene Family AT5G35390 53.605 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso5g1878 PK_Tyr_Ser-Thr 4.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1878 - - gmx:100804368 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1878 5 41969950 41973242 Gso8g0232 8 2202782 2205345 GST