Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1876 ATGGGGATTTGCTTTAGCATTGAAGACCAAAACCACCTTTCCATCTCCGATTCCAACGCGAAGCCTAAACCTGCAGTAGGTCATGAATCTGGCGCTCCATTGGCTTCCATGAACATCAAAGATCTCCGCGAAGGTGCTGGATACAGCAATGTGGATATTTTTACCTACGAGGAGCTTAGGCTCGCGACGAAGCACTTTCGGCCCGATTTCATCTTGGGAGAAGGAGGCTTCGGAGTTGTATATAAAGGCGTCATAGACCATAGCGTGAGGTCGGGTTACAAGTCCACTGAAGTCGCCATTAAGGAACTTAATCGCGAAGGATTTCAAGGCGATAGGGAATGGCTCGCGGAAGTTAACTATTTAGGTCAATTCAGTCACCCAAATCTGGTGAAGCTCATTGGATATTGCTGTGAGGACGACCACCGGTTATTGGTCTATGAATACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAGGGGACTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATATCGTGATTTCAAGACTTCAAATATCTTGCTAGATGCGCAGGATTTCAACGCGAAGCTTTCAGACTTTGGCCTTGCAAAGGATGGTCCGATGGGGGACCAAACCCATGTTTCAACACGAGTAATGGGCACATATGGATATGCTGCTCCTGAGTATGTCATGACTGGGCATTTGACAGCTAGAAGTGATGTGTATGGTTTTGGGGTGGTGCTGCTTGAAATGCTTATTGGTAGAAGAGCATTAGACAAGAGCAGGCCCAGCCGAGAGCACAACTTGGTTGAGTGGGCCCGTCCACTACTGAATCATAACAAAAAGCTTTTGAAAATTCTAGACCCAAAACTAGAGGGGCAATATTCAAGTAAAACGGCATTGAAGGTGGCCCATTTAGCATACCAGTGTCTTAGCCAAAACCCGAAAGGTAGACCACTAATGAGCCAGGTTGTTGAAATTCTCGAAAACTTTCAGTCAAAGGGGGAAAATGAGGAAGATCAAATGCTTCAAACTGGCGATACCAGTATAACCCTTTATGAGGTTCCTAAGGGCAGCAATGGCACTCCAACTTAG 1143 0.4576 MGICFSIEDQNHLSISDSNAKPKPAVGHESGAPLASMNIKDLREGAGYSNVDIFTYEELRLATKHFRPDFILGEGGFGVVYKGVIDHSVRSGYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYCCEDDHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDAQDFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKLEGQYSSKTALKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSKGENEEDQMLQTGDTSITLYEVPKGSNGTPT* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1876 380 CDD STKc_IRAK 72 347 - -
Gso5g1876 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Gso5g1876 380 ProSitePatterns Protein kinases ATP-binding region signature. 72 101 IPR017441 GO:0005524
Gso5g1876 380 ProSiteProfiles Protein kinase domain profile. 66 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1876 380 Gene3D Transferase(Phosphotransferase) domain 1 149 369 - -
Gso5g1876 380 Pfam Protein kinase domain 71 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1876 380 Gene3D Phosphorylase Kinase; domain 1 42 148 - -
Gso5g1876 380 PANTHER OS01G0588500 PROTEIN-RELATED 19 375 - -
Gso5g1876 380 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 19 375 - -
Gso5g1876 380 SUPERFAMILY Protein kinase-like (PK-like) 50 346 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1876 Gso-Chr5 41946507 41952173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1876 54 344 Glycoside Hydrolase AT3G07070 52.041 2.20e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso5g1876 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1876 - - gmx:100800465 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1876 5 41946507 41952173 Gso8g0229 8 2177512 2182517 GST