Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1859 ATGGGTGTTCCACAACCTCCACCTCCCTCTCAACATCTCTATCCACAAGAAATTCAGCTTAAACTTTACCAAGCCTTCATATTCTCAATTCCCATACTCTTTTCCATCATTTTGGTTCTTTTGTTTTACTTGTTCTACCTCAAAAGGAGGGCTTCTTCTCTCTCATCACCACCTCTCCACATACTTCCCAGTACTACTAATTCACAAACTACATATCCTTATCCTTCACAACCTTGCCGTTTAGATCTGACAGTGCAATTTCTGGACAAACTTCCAAGAATTTTGTTTCATGAGGATTTAAGAACAGGAGATTCAGTATGTTGTGTTTGCCTAGGAGAATTTGAGCTGAAGGAAGAGTTGCTACAGATTCCTTATTGCAAGCATGTGTTTCATATAAGCTGCATAAGTAACTGGCTGCAATCAAACTCCACGTGTCCACTTTGTAGATGCTCCATCATTCCCTCTACCAAGTTCCTTAATCCCGCGCCACCTATTATATCAGACCCAACACGGCAAGGTGGAGTTTCAGGCTCTTCATCACACATCTTGTCATTGCCTCATCAACAAGAAGAAGTTGGTGCTTCCACAAATACTACCATTTTTCAAGGGAATGATGTATAA 621 0.409 MGVPQPPPPSQHLYPQEIQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASSLSSPPLHILPSTTNSQTTYPYPSQPCRLDLTVQFLDKLPRILFHEDLRTGDSVCCVCLGEFELKEELLQIPYCKHVFHISCISNWLQSNSTCPLCRCSIIPSTKFLNPAPPIISDPTRQGGVSGSSSHILSLPHQQEEVGASTNTTIFQGNDV* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1859 206 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Gso5g1859 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 154 IPR013083 -
Gso5g1859 206 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 19 165 - -
Gso5g1859 206 SMART ring_2 107 148 IPR001841 -
Gso5g1859 206 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 19 165 - -
Gso5g1859 206 SUPERFAMILY RING/U-box 85 158 - -
Gso5g1859 206 Pfam Ring finger domain 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1859 Gso-Chr5 41768547 41770542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1859 3 179 C3H Transcription Factor Family AT4G10150 35.676 6.35e-33 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1859 K19039 - gmx:100806499 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1859 5 41768547 41770542 Gso8g0211 8 1970167 1972156 GST