Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1854 ATGGACGATGCCGAAACCAAAGGAAGAATCGAAGAAACTGTTCGCAGGGTTTTGCAAGAATCGGACATGGACGAGGTTACTGAGTCTAAGATTCGAAAACAGGCCTCCGAACAACTTGGCCTCGACCTGTCTCAGCCCCATTTTAAAGCCTTCGTCAAACAGGTCGTGAAGGCTTTTCTCCAAGAAGAAGAACAAAGACAGCAACAACAGCAACAAGATGAAGATGATGATGATGAAGAAGAAGAACAAGGAGGAGTTTCCAAGGGCAAGGAGTACGATGATGAAGGCGATCTCATCATCTGCAGGCTTTCAGATAAGAGAAGGGTGACGATTCAGGATTTCAGAGGGAAAACATTGGTCTCCATTCGGGAGTATTATAAAAAGGATGGCAAGGAGCTTCCTACTTCCAAAGGAATAAGTTTGACAGAAGAGCAGTGGTCAACCTTTAAGAAAAATGTGCCTGCCATAGAAAAAGCCATTAAGAAAATGGAGTCAAGTTGA 501 0.4391 MDDAETKGRIEETVRRVLQESDMDEVTESKIRKQASEQLGLDLSQPHFKAFVKQVVKAFLQEEEQRQQQQQQDEDDDDEEEEQGGVSKGKEYDDEGDLIICRLSDKRRVTIQDFRGKTLVSIREYYKKDGKELPTSKGISLTEEQWSTFKKNVPAIEKAIKKMESS* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1854 166 SUPERFAMILY ssDNA-binding transcriptional regulator domain 100 162 IPR009044 GO:0003677|GO:0006355
Gso5g1854 166 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 165 IPR045125 GO:0003713|GO:0060261
Gso5g1854 166 MobiDBLite consensus disorder prediction 62 93 - -
Gso5g1854 166 PIRSF RNA_polymII_KELP 1 166 IPR017415 -
Gso5g1854 166 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP 4 165 - -
Gso5g1854 166 MobiDBLite consensus disorder prediction 1 31 - -
Gso5g1854 166 Pfam DEK C terminal domain 6 60 IPR014876 -
Gso5g1854 166 Gene3D Transcriptional Coactivator Pc4; Chain A 89 166 IPR009044 GO:0003677|GO:0006355
Gso5g1854 166 Coils Coil 60 80 - -
Gso5g1854 166 Gene3D - 2 63 - -
Gso5g1854 166 SUPERFAMILY DEK C-terminal domain 4 61 - -
Gso5g1854 166 Pfam Transcriptional Coactivator p15 (PC4) 101 152 IPR003173 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1854 Gso-Chr5 41736779 41738967 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Gso5g1854 DEK_C 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1854 K25815 - gmx:100305633 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1854 5 41736779 41738967 Gso8g0207 8 1941172 1943352 GST