Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1851 ATGGAAGCGGATTTCGTCACCAGTGACATGCTCACACTCACGCAGGACGCTTTTTACGCCAACGATAATGATGATGTAGCTGTTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGACTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACTATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTAATCACTTGTGTTCCAGTATATGATACCATTGGAAACAATAAAGTTGAAGATGATTCATTCTTCAGAGATGATGACTGGTCCATTGAAGAGAAGAATAACACACTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAGGTTCGCAATGGGTTGGCTACTATTGAAGGAGATTCTGATCTCGATACATCAATAGCCTGTGATTCATGTGATATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCAGACAGTACATGGTTATGCCCCAGATGTGTTGCTGATGAAGTTTCTAAAGGAACATCCAATTCAGTAGAGAGGACAACCGTGGAATGTAATGCAGATAATCGTAATAGTAACAGTGAATGCCATGCTGAGGATTCCTTTTCAGGAAAAGTGTCTGTGTCTGTTGCTGATACAGGAGAGACAGCTGTTGTTGTTTCAATGGTTGACCAAACAATATGGGTTCCGGCAACAAGTGAGAAAAGCCTATTGTCTTTTGAAGTTGGTGGGTACCCAATGACTGAATCATGTATTTTAATGTCTGACACAAATGGTCAGCAAAGTGGGGAAGTGAAGACAGAGACAAATACGTTACGAATCATGGAGGAAGAAGAACTGGAACTGTCTTTGTCAAACAACATATCCTGTAGCATAACTTCTAAATCCTTAGTGCATAATGATTTAAAGAAAAGTGTCAGTGGAGCAAGGGATGACCCAAGTGGCTTTGACGGAACCAAGTTATTCAACGAGTCCCTTACCAAAACTAGTCCATCCAGAATTGAATCTGAAATGGGTCTTCAACTTGGTTTGTCAGTGGGCTCTTTCTTATCTGTTGATAGTGCAGACAAGAATGAAACAAAAGATCAAGCAACTGATGTCCTGTGCTTGAGTTCAGAAGAATGTTTTTTGAAAGGAGATGAAATTGAAGCCAATGCTTGTAAGGACAATGCCAGAGTGGCTGGTGGAAAGAGAAAGCATACTGATTATAGTGATGAGCAAGTTTATATAAAGGCTGATGATGGAGATGTCAAGCCTGAACTTCCAGAAGAAGATGACAAGCCTGAACTTCCGGATGAAATTGGACAAAAGAAAATTAGAGCTACCGGTAGTCAAATGACCAGTACTAATGACTCTGCAGATGCTCATCCCTTAGAAAATGCTCAGAAATGCCCTGCTTTAAAGCATTCTCCAACAAAGGCCATTGTCAAATCAAATATAATGAATATAGTTAAAGGGACAAACCGGAGGCAATCCAAGGGACGTACTGACACTAATGCTTGTGACAAGTTATCTGAAAACAAAGGAAATATGGCTGGGTTGAGGGTTAAAAAGATCATGAAGAGAGTCTCTGATGATGGAGAATCATCCTTGGTAGTTCAAAATCTAAGGCAAGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTTGAGGATAACCATTTTGATCCCAAGCTTCTTGAAGCATTTAGGGCTGCTATAACAGGGCCTAAAACTGAACTTGTAAACAAGTTATCCCCTGCAGCTATAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTGCGTGAAAATCTAACCAAGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCGTGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAGGTTCAGACAGTCCAGAATCAAAGCAAGCTTCTGAATGTCAGGCCAAGAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCTCGGAAAGAGGATGTCAAACCTCTCTCTGTGCTTAAAACCATTGCTAACTCGGAGCAAACTAAGCATAACAACCCATCAGACAAAGCACCAAATCTATTTGTTGATAACAATACTAAAGCAACTAATGTATATAATCTTTTATCAAAGAACAGCGTTTGTTCATCTGAAAAAAAAGTAGATAAGAAGCTTGTACATGGTCCAGTTGGTGATAATTCAACTTCTGGTAAAGTACGTTCAAACAATCACTCAGAAAGGACATCGGTTTCATCAGCTGGTGCCAAAACTAGCACAAAAGAGTTAGGCCTTAAATTAGGTTGTATGAAGAGTGATAAAAGAAAATGGGCCTTGGAGGTTCTTGCGAGGAAAACAGCTGCCACAAGCAGGAACACAGCAAATGGAAATCAGGAAGACAATGCAGTTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTGCCAATTGATATGAGACCAGTATTGGCACCTTGTCGCCACAATAAAATTCCTATATCAGTGAGGCAGGCCCAGCTTTACCGCCTGACAGAGCGCTTATTGAGGAACACAAATCTGGCTGTGATTCGCAGAACTGCAGATACAGAATTAGCTGTTGCAGATGCAGTTAATATTGAAAAAGAAGTTGCTGACAGATCAAACAGCAAACTTGTGTATTTGAACCTTAGTTCACAAGAGCTCTTGCATCGCACAAATAACACAAAAACCAATGTAGCCACAGATACAAGTCCACCAGCCTCATCAGCAATGCTTACTGATCAACAATCGGAACTTAATACTGATGATCTTTCAACTGACCCGGAAGTTGAAACAGCCTTGAAAAATGCTGGTCTGTTGTCTGATTCCCCACCTAGCAGTCCACATGAGAGCAGAGAAACATGTAATAGTGATATGTCAGGGCCTGATAATATACTTGAACTAGATTCTCATCCTGATCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTATATTGGTGCTAGTGTTACAAAGGTCTCAAATCCAAAACAAGAGCAAAATGAGTCAAAAGTGAAACTTGTTTTCTCCACGATGAATTTGAAAAAGTCAGATATCGCTTTGGATTGTGCAGACTGGGAGGGGTCTGAAAGAATTGAAGTGCCAGGAGATGCATCCTGCTCACCAAATTGTCACAATGATGCAGTCCTTAGGGACAGGGCTTCTACAATTGATGAGGAGATGGGCCAGCCTTCTGTTTCTTCTGAGCTCCTACCCTGTGAGGCTGCTGTTGAGCCACCTGACTCAGAATTTGAAGAATTATATGGCCCAGACAAAGAACCACTTATAAAAAAATTTCCAGTCAGTGAATCAAGATCATTACTTGGAGATGGCAAGACAGAAAATCTAAGTGTGGCCAATGATTGCCATAATGACGAAACAGAGGTCTTGGACGATGCAGTAAATGCTTCAGAACTTGAGAATGAGAATCTCACAGAAAAAGTTTCTGTTACTACCATCACTGACAAATCTTCTAATGTGTCTGAGGGTGGTGAAAATTCCCAAAAGAAGGAAGAGAAATCTAATGTCATTGCTAAGCAGACTGACTCTGTAAATCATGTAACTAAAAGGGTAGAAGCTTACATCAAGGAGCACATCAGACCACTGTGCAAGAGTGGTGTAATCACGGCTGACCAATACAAGTGGGCTGTTGCAAAAACGACTGAGAAGGTTATGAAATATCATTCCAAAGCAAAGAATGCTAATTTTCTCATAAAGGAAGGCGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAAGCAGCCCAACAGAACAGAAAAAATTGA 3924 0.4024 MEADFVTSDMLTLTQDAFYANDNDDVAVEGERCGICMDMVIDRGLLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGNNKVEDDSFFRDDDWSIEEKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATIEGDSDLDTSIACDSCDIWYHAFCVGFDTEGTSDSTWLCPRCVADEVSKGTSNSVERTTVECNADNRNSNSECHAEDSFSGKVSVSVADTGETAVVVSMVDQTIWVPATSEKSLLSFEVGGYPMTESCILMSDTNGQQSGEVKTETNTLRIMEEEELELSLSNNISCSITSKSLVHNDLKKSVSGARDDPSGFDGTKLFNESLTKTSPSRIESEMGLQLGLSVGSFLSVDSADKNETKDQATDVLCLSSEECFLKGDEIEANACKDNARVAGGKRKHTDYSDEQVYIKADDGDVKPELPEEDDKPELPDEIGQKKIRATGSQMTSTNDSADAHPLENAQKCPALKHSPTKAIVKSNIMNIVKGTNRRQSKGRTDTNACDKLSENKGNMAGLRVKKIMKRVSDDGESSLVVQNLRQEIREAVRNKSSINFEDNHFDPKLLEAFRAAITGPKTELVNKLSPAAIKAKKSMLQKGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKGSDSPESKQASECQAKNPILSRLYLADTSVFPRKEDVKPLSVLKTIANSEQTKHNNPSDKAPNLFVDNNTKATNVYNLLSKNSVCSSEKKVDKKLVHGPVGDNSTSGKVRSNNHSERTSVSSAGAKTSTKELGLKLGCMKSDKRKWALEVLARKTAATSRNTANGNQEDNAVFKGNYPLLAQLPIDMRPVLAPCRHNKIPISVRQAQLYRLTERLLRNTNLAVIRRTADTELAVADAVNIEKEVADRSNSKLVYLNLSSQELLHRTNNTKTNVATDTSPPASSAMLTDQQSELNTDDLSTDPEVETALKNAGLLSDSPPSSPHESRETCNSDMSGPDNILELDSHPDLDIYGDFEYDLEDEDYIGASVTKVSNPKQEQNESKVKLVFSTMNLKKSDIALDCADWEGSERIEVPGDASCSPNCHNDAVLRDRASTIDEEMGQPSVSSELLPCEAAVEPPDSEFEELYGPDKEPLIKKFPVSESRSLLGDGKTENLSVANDCHNDETEVLDDAVNASELENENLTEKVSVTTITDKSSNVSEGGENSQKKEEKSNVIAKQTDSVNHVTKRVEAYIKEHIRPLCKSGVITADQYKWAVAKTTEKVMKYHSKAKNANFLIKEGEKVKKLAEQYAEAAQQNRKN* 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1851 1307 SUPERFAMILY RING/U-box 23 78 - -
Gso5g1851 1307 SMART PHD_3 131 183 IPR001965 -
Gso5g1851 1307 Pfam PHD-finger 146 183 IPR019787 -
Gso5g1851 1307 PANTHER RING/U-BOX PROTEIN 103 1304 - -
Gso5g1851 1307 MobiDBLite consensus disorder prediction 938 969 - -
Gso5g1851 1307 MobiDBLite consensus disorder prediction 763 794 - -
Gso5g1851 1307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 184 IPR013083 -
Gso5g1851 1307 MobiDBLite consensus disorder prediction 1201 1227 - -
Gso5g1851 1307 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Gso5g1851 1307 MobiDBLite consensus disorder prediction 427 449 - -
Gso5g1851 1307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 95 IPR013083 -
Gso5g1851 1307 MobiDBLite consensus disorder prediction 772 794 - -
Gso5g1851 1307 Coils Coil 550 570 - -
Gso5g1851 1307 MobiDBLite consensus disorder prediction 938 1005 - -
Gso5g1851 1307 PANTHER RING FINGER PROTEIN 41, 151 103 1304 - -
Gso5g1851 1307 MobiDBLite consensus disorder prediction 981 1005 - -
Gso5g1851 1307 ProSiteProfiles Zinc finger PHD-type profile. 65 185 IPR019787 -
Gso5g1851 1307 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Gso5g1851 1307 SUPERFAMILY FYVE/PHD zinc finger 146 185 IPR011011 -
Gso5g1851 1307 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Gso5g1851 1307 SMART ring_2 33 71 IPR001841 -
Gso5g1851 1307 SMART ring_2 123 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1851 Gso-Chr5 41710207 41720477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1851 27 75 C3H Transcription Factor Family AT2G39100 32.692 5.91e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso5g1851 PHD 3.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1851 - - gmx:100808102 2577.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1851 5 41710207 41720477 Gso8g0203 8 1901403 1914123 GST