Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1843 ATGGCTCCCTCAGCCATATTATTATGTGCTTTTTGCATCTTCCTTTCCAATCTCCAAAGCACAAGAGGGAGCAAACAGATCAACTGCAACACCTTGCGTTGCGGCGATATAGATATTCAGTTCCCTTTCGGTTTGAGAGGATCCAACCAAGATCGTGGCTGCAGGTATTACCCAGTTCAAAGCTTCCAACTTTCGTGCCTCCACGGAGGAACACAAACCATTCTCACCCTCCCAGGCTTCGGTAACTTAACCGTCAAAAGCATCGATTACGAATCCCAAAGCATCCGAGTCAACGACCCAGATGGGTGTCTCCCGAAACGGTTCTTACAAAAGTGGAGCCTTTCGGTTTCGGATTCACCTTTTGTTTTAAACCCCATGATTTATGGGACAATTCCCTTTAACCTCACTTTCCTGCGATGCCCCTCCAACGTGACGGACTCGTCTCAATACCCCTTGGTGCCAATTTCGTGCCTGAGCAACAACAGCAACTACTCGGTCATAGCTTCGTGGTCGCAACCTATTATGTCGTCACCCTCGTTGTCTCAACAGTGCCAGGTCATGTCTCGGGCTCTTGTCCCTCTCCCCGTGTTGGACATGCCCATGTGGCCCTTCTGGCCCGATCTCAACACTGATCTTGATTTGGTTTGGACCGAACCCGATTGTAGGAACTGTGCACTCAGTGGCCAAGTTTGTGGGTTCTCCAAGGAGAAAACTAAAACCCCTCAAGTTCGGTGTTTCGCTAGGGACTCCACCAAAGGTCTTTCAAGAAGTGCCAAATATGGGTTAGCAATAGGAGTGGGAATACCTGGACTCTTGTGTCTAATCGGGATTTCTTGCTGTATCTGCGGCAAGCTAACAAATCGTCGACGTAGCGCGGATCTTCCGGTGACAATTTCCCTAGAACCCGTCCCTTTCGTAATGGGACTGGACGGTGCCACAATTGACAAGTATCCCAAAACTCTTATTGGGGAGAGTGGGCGCTTACTGAAGCCCAATGACAACACCTGCGCAATTTGCCTCTCTGAATATCAACCCAAAGAGACCTTGAGGAGCATTCCCGAATGTAACCATTATTTTCACGCAGATTGCATAGATGAGTGGCTCAGATTGAATGCCACGTGTCCCTTGTGCAGGAATTCGCCTGAGGCATCTTCCACTGCTTCTTTTTTTTCCTTGTCTCCCACTTCTTCATCGTCCTCTCGGTCTCCACAGTAA 1215 0.4897 MAPSAILLCAFCIFLSNLQSTRGSKQINCNTLRCGDIDIQFPFGLRGSNQDRGCRYYPVQSFQLSCLHGGTQTILTLPGFGNLTVKSIDYESQSIRVNDPDGCLPKRFLQKWSLSVSDSPFVLNPMIYGTIPFNLTFLRCPSNVTDSSQYPLVPISCLSNNSNYSVIASWSQPIMSSPSLSQQCQVMSRALVPLPVLDMPMWPFWPDLNTDLDLVWTEPDCRNCALSGQVCGFSKEKTKTPQVRCFARDSTKGLSRSAKYGLAIGVGIPGLLCLIGISCCICGKLTNRRRSADLPVTISLEPVPFVMGLDGATIDKYPKTLIGESGRLLKPNDNTCAICLSEYQPKETLRSIPECNHYFHADCIDEWLRLNATCPLCRNSPEASSTASFFSLSPTSSSSSRSPQ* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1843 404 Pfam Ring finger domain 334 378 IPR001841 -
Gso5g1843 404 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 403 - -
Gso5g1843 404 SMART ring_2 336 377 IPR001841 -
Gso5g1843 404 CDD RING-H2_PA-TM-RING 335 378 - -
Gso5g1843 404 MobiDBLite consensus disorder prediction 382 404 - -
Gso5g1843 404 Pfam Wall-associated receptor kinase galacturonan-binding 29 99 IPR025287 GO:0030247
Gso5g1843 404 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 403 - -
Gso5g1843 404 SUPERFAMILY RING/U-box 329 380 - -
Gso5g1843 404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 383 IPR013083 -
Gso5g1843 404 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1843 Gso-Chr5 41649054 41651837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1843 22 387 C3H Transcription Factor Family AT2G46495 34.048 5.77e-50 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1843 - - gmx:100810240 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1843 5 41649054 41651837 Gso8g0195 8 1845958 1848323 GST