Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1828 ATGGGCGACACTGTTGTTGCTGAAGTACCCGCAAAGAGGGGAAGGGGCAGAAGGGCCCTGAAGGAGAAAACCCCATCAACGAACGATGCCAACATCATCATAGCCACACCAATTTCGCCATCATCCGATAAGGCACAAGTTCCCTCAAAGAAAAAACAAGATTCCAAGAAGCAGCAATCTTTCGAGAAAGAATTGCTTGAGATGCAGGAAATGTTGCAGCAGATGCGCCTCGAGAAGGAGAAGACCGAAGAGCTCTTGAAGCTCAAGGACGAGGCTCTCAAGCAGAAAGACGAAGAGCTCAAAAACCGCGGCCGCGAGCAAGAGAAGCTTCAGACCGAGCTCAAAAAATTGCAGAAGTTGAAGGAGTTTAAACCTACCATGAATTTGCCTGTGTTGAAAGATAATGAAGAAAAGAAGGATAAGAAGAAGAAGGGGTGCTCTGAGAAGAAAAGGCCTTCTCCACCTTACATTTTGTGGATGAAAGACCAATGGAATGAGATCAAGAAAGCGAACTCAGAGGCAGAATTTAAGGAAATTTCTACCATGCTGGGTTCTAAATGGAAGACTGTTACTGCAGAAGAGAAGAAGCCTTATGAGGAGATATACCATGCCGAGAAAGAAGCTTATTTGCAAATGATTGCAAAGGAAAAACGTGAGACTGAGGCAATGAGGTTGTTGGAAGACGAGCAGAAGCAGAAGACTGCCATGGAGTTGCTCGAACAGTACATGCAATTCAAACAAGAGGCAGAAAAAGAGGGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCGAAGCACCCCATGTCAGCTTATTTCTTGTTCACTAATGATAGACGAGCAGCTCTTGTTGCTGAGAACAAGAATTTCTTGGAGGTTCCAAAGATCACAGCCGAAGAGTGGAAAAACATGACAGAAGAACAAAAGAGACCCTATGAAGAGATGGCAAAGAAAAATAAGGAGAAATATGCCCTAGAAATGGAGGTTTATAAACAGAAGAAAGATGAGGAGGCTGCCCATTTCATGAAGGAAGAGGAGGAGCATATGAAACTTCAAAAACAAGAAGCATTGCAACTGCTGAAGAAGAAGGAGAAAACCGAAAATATAATCAAGAAAACAAAACAGAAGAAGAAACAAAACAAGGATGACAAGAATTCTGATCCAAACAGGCCTAAGAAGCCTGCATCCTCTTTCATCTTATTCAGCAAAGAAGCAAAGAAAACTTTACATGAGGAGCGACCAGGAATCAACACCTCAACCCTTAATGCACTTGTTTCATTGAAGTGGAAGGAACTGAGCGTGGAGGATAGACAATTCTGGAATGGCCAAGCATCAAAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCCATTGCCGCAACTGCAAGCCAGGAGCTGAAAACCGAATAA 1422 0.4304 MGDTVVAEVPAKRGRGRRALKEKTPSTNDANIIIATPISPSSDKAQVPSKKKQDSKKQQSFEKELLEMQEMLQQMRLEKEKTEELLKLKDEALKQKDEELKNRGREQEKLQTELKKLQKLKEFKPTMNLPVLKDNEEKKDKKKKGCSEKKRPSPPYILWMKDQWNEIKKANSEAEFKEISTMLGSKWKTVTAEEKKPYEEIYHAEKEAYLQMIAKEKRETEAMRLLEDEQKQKTAMELLEQYMQFKQEAEKEGKKNKKEKDPLKPKHPMSAYFLFTNDRRAALVAENKNFLEVPKITAEEWKNMTEEQKRPYEEMAKKNKEKYALEMEVYKQKKDEEAAHFMKEEEEHMKLQKQEALQLLKKKEKTENIIKKTKQKKKQNKDDKNSDPNRPKKPASSFILFSKEAKKTLHEERPGINTSTLNALVSLKWKELSVEDRQFWNGQASKAMDAYKKELEEYNKSIAATASQELKTE* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1828 473 SUPERFAMILY HMG-box 385 462 IPR036910 -
Gso5g1828 473 MobiDBLite consensus disorder prediction 125 154 - -
Gso5g1828 473 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 468 IPR044601 GO:0003677
Gso5g1828 473 Coils Coil 441 468 - -
Gso5g1828 473 Pfam HMG (high mobility group) box 265 331 IPR009071 -
Gso5g1828 473 Pfam HMG (high mobility group) box 150 214 IPR009071 -
Gso5g1828 473 Pfam HMG (high mobility group) box 391 459 IPR009071 -
Gso5g1828 473 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 149 217 IPR009071 -
Gso5g1828 473 Coils Coil 58 120 - -
Gso5g1828 473 MobiDBLite consensus disorder prediction 25 46 - -
Gso5g1828 473 MobiDBLite consensus disorder prediction 10 24 - -
Gso5g1828 473 CDD HMG-box 391 456 - -
Gso5g1828 473 Coils Coil 342 383 - -
Gso5g1828 473 MobiDBLite consensus disorder prediction 245 266 - -
Gso5g1828 473 MobiDBLite consensus disorder prediction 362 398 - -
Gso5g1828 473 CDD HMGB-UBF_HMG-box 265 328 - -
Gso5g1828 473 CDD HMGB-UBF_HMG-box 151 209 - -
Gso5g1828 473 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 331 IPR009071 -
Gso5g1828 473 Gene3D High mobility group box domain 247 346 IPR036910 -
Gso5g1828 473 Gene3D High mobility group box domain 133 226 IPR036910 -
Gso5g1828 473 MobiDBLite consensus disorder prediction 1 60 - -
Gso5g1828 473 SMART hmgende2 390 460 IPR009071 -
Gso5g1828 473 SMART hmgende2 148 218 IPR009071 -
Gso5g1828 473 SMART hmgende2 264 332 IPR009071 -
Gso5g1828 473 MobiDBLite consensus disorder prediction 131 150 - -
Gso5g1828 473 Gene3D High mobility group box domain 368 463 IPR036910 -
Gso5g1828 473 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 391 459 IPR009071 -
Gso5g1828 473 SUPERFAMILY HMG-box 252 337 IPR036910 -
Gso5g1828 473 MobiDBLite consensus disorder prediction 245 267 - -
Gso5g1828 473 SUPERFAMILY HMG-box 137 213 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1828 Gso-Chr5 41544741 41547273 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gso5g1828 HMG_box 6.6e-13 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1828 K09273 - gmx:100814709 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1828 5 41544741 41547273 Gso8g0185 8 1760899 1763424 GST