Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1820 ATGGCTTCATCTTCCATAAAAAACACACACCACCTTAACCGCACAAAACTCTTCATGGAAGAAGATACCCTTTTGAAGAAGAAGCGTCACTACCCCAAACTCATACGAATACGTGTCACCGACGCCGACGCTACTGACTCTTCCAGCGACGACGACGAGCCCTCGGTGTCCTCCACGCGCCGCCGAGTCAAATACTTCGTCAACGAGATTACCATCCAAGGCGGCGGCGGCGGTGGTGGTTGCGTTAACGTTGTTTCTAGGAAAAGAAGGTTCAAGGCTGGTGCCGGAGCTCCATCGTGTCGGCGGCGGACGGGGGCGAAGAAGTTCCGGGGAGTGAGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATTAGGGACCCGTTGCGCCGCGTGCGGCTGTGGCTGGGAACCTACGACACCGCCGAGGAAGCCGCCATTGTGTACGACAACGCGGCCATTCAGCTTCGCGGTGCCGACGCGCTCACCAATTTCGTAACGCCGCCGCGGGAGAACAGAAAAACCGGTTACTGCTCCGGCGAGGAGTCACGGAACAACGACTTGCGTTCCCCCACTTCGGTTCTTGGGTGCCGTTCGGTGTACGAGGAAGCTGAGTCCGTAACCGCAAACGCAACCGGAAACGACGTCGTCGACGAGTCCGTAACAGTAGTCGCAAACGACGTCGTTGGGCCCTCAAGTGAGTGCGAGTATTCATGCGTTTCGGAAGATAGTAATAATGATAAGTTGAAACCGGAGTCAGTGTTTCCTATTCCAAACGATGTGGTGTTTGACTTTCAAAGCACGTTAGATATGTTTGATGAAGGGATTAATACTAATAATAATAATAATGTGGCAGAGAGTAGTATATTCTTGGCGGAGGATTTTGATTTCAAAGGAAGCTTTGTTAATGAGAATTTAGATTTGGGTTTTACGAGTTGGCATAGAGAGTGTGATAATTTCCAAGACATTGGGGATTTGTTTGTTTGGGATCCTCTTGTCGCTCTTTGA 1005 0.5204 MASSSIKNTHHLNRTKLFMEEDTLLKKKRHYPKLIRIRVTDADATDSSSDDDEPSVSSTRRRVKYFVNEITIQGGGGGGGCVNVVSRKRRFKAGAGAPSCRRRTGAKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAIVYDNAAIQLRGADALTNFVTPPRENRKTGYCSGEESRNNDLRSPTSVLGCRSVYEEAESVTANATGNDVVDESVTVVANDVVGPSSECEYSCVSEDSNNDKLKPESVFPIPNDVVFDFQSTLDMFDEGINTNNNNNVAESSIFLAEDFDFKGSFVNENLDLGFTSWHRECDNFQDIGDLFVWDPLVAL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1820 334 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Gso5g1820 334 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Gso5g1820 334 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Gso5g1820 334 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Gso5g1820 334 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 5 330 - -
Gso5g1820 334 CDD AP2 107 164 IPR001471 GO:0003700|GO:0006355
Gso5g1820 334 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Gso5g1820 334 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 330 - -
Gso5g1820 334 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Gso5g1820 334 SUPERFAMILY DNA-binding domain 108 165 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1820 Gso-Chr5 41483140 41484897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1820 1 334 AP2-EREBP Transcription Factor Family AT4G23750 39.842 3.83e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso5g1820 AP2 8.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1820 - - gmx:100813992 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1820 5 41483140 41484897 Gso8g0178 8 1707209 1708778 GST
Gso11g0164 11 1352040 1353836 Gso5g1820 5 41483140 41484897 PCT