Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso5g1815 | ATGAACGACGCAGATGTCTCGAAGCAAATCCAGCAGATGGTGCGGTTCATCCGCCAGGAAGCTGAGGAAAAGGCCAACGAGATCTCTGTCTCCGCCGAAGAGGAATTCAATATCGAGAAGCTGCAGTTGGTCGAAGCCGACAAGAAGAAGATCAGGCAAGAATACGAACGCAAAGAGCGCCAAGTCGAAATTCGCAAGAAGATTGAGTACTCGATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAAGATGACGTGATCAGTTCCATGAAAGAAGCTGCATCCAAGGAACTGTTGAATGTGAGTCATCATCATCATTTGAATCTACTGAGTCATCATCATCATGAGTACAGAAACCTGCTGAAAGATCTCATTGTTCAGTGTTTGCTTAGACTGAAAGAACCTTCTGTCTTATTGAGATGTCGGAAAGATGACCTGCATTTGGTAGAGCATGAGCTGGATTCAGCTGCCCAGGAGTATGCTGAGAAAGCAAATGTTGATCCCCCAGAGATCATTGTTGACAACCAAGTCTATCTTCCACCTGGACCCACTCATCACAATTCTCATGATCTCTACTGCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGACTTGATGTAGTGTTCCGTAAAAAGCTTCCAGAGATCCGAAAGCAGCTCTTTGGACAAATTGTTGCTTGA | 720 | 0.4542 | MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEADKKKIRQEYERKERQVEIRKKIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLNVSHHHHLNLLSHHHHEYRNLLKDLIVQCLLRLKEPSVLLRCRKDDLHLVEHELDSAAQEYAEKANVDPPEIIVDNQVYLPPGPTHHNSHDLYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQIVA* | 240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso5g1815 | 239 | Gene3D | - | 94 | 237 | IPR038495 | - | |
| Gso5g1815 | 239 | PANTHER | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 1 | 239 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Gso5g1815 | 239 | Coils | Coil | 41 | 61 | - | - | |
| Gso5g1815 | 239 | Pfam | ATP synthase (E/31 kDa) subunit | 16 | 234 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Gso5g1815 | 239 | Hamap | V-type proton ATPase subunit E [atpE]. | 8 | 235 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Gso5g1815 | 239 | PANTHER | ARCHAEAL/VACUOLAR-TYPE H+-ATPASE SUBUNIT E | 1 | 239 | - | - | |
| Gso5g1815 | 239 | SUPERFAMILY | V-type ATPase subunit E-like | 87 | 235 | - | - | |
| Gso5g1815 | 239 | Gene3D | - | 1 | 62 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso5g1815 | Gso-Chr5 | 41444217 | 41456704 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso5g1815 | 1 | 239 | Primary Pumps ATPases(2) | AT4G11150 | 72.385 | 1.86e-124 | 350 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso5g1815 | K02150 | - | gmx:100499818 | 452.21 |