Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1811 ATGGGAAACTGCAGCAGCGGGGCCGGAGCCCCCACCACCTACTCCGACGACCATCCCCACCACAACGGCATAACCGTCCTCCCTCCCAACTCAAACCCTTCACCCCAACTCCCCAAGCCCCCACCGACCTCCTCCTCCTCCTCCTCGCTGGGCCGGGTTTTGGGCCGGCCCATGGAGGATGTCCGGTCCATTTACATATTCGGGCGGGAGCTGGGGCGCGGGCAGTTCGGCGTGACGTACCTGGTGACCCACAAGGCCACGAAGGAGCAGTTCGCGTGCAAGTCAATCGCGACGCGGAAGCTGGTCAACCGCGACGACATCGACGACATCCGCCGCGAGGTCCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTCGAGCTCAAGGGCGCCTACGAGGACCGCCACTCCGTCAACCTCGTCATGGAGCTCTGCGCCGGCGGTGAGCTCTTCGACCGCATCATCACCAAGGGCCACTACTCCGAGCGCGCCGCCGCCAACTCCTGCCGCCAGATCGTCACCGTCGTCCATAACTGCCACTCCATGGGAGTCATGCATAGGGACTTGAAGCCCGAGAATTTCTTGTTGCTCAACAAGAACGATGATTCCCCCCTCAAGGCCACAGATTTTGGCCTCTCCGTCTTTTTTAAGCCAGGGGATGTGTTTAGAGACCTTGTTGGGAGTGCTTACTATGTTGCTCCTGAGGTGCTGAGAAGAAGTTATGGACCTGAAGCTGATATTTGGAGTGCTGGAGTTATATTGTACATTCTACTTTCTGGTGTTCCACCTTTTTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTTGCATCAGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAGCGACTTTCAGCGGTTGAAGTACTTAATCATCCCTGGATGAGAGTGGATGGAGATGCACCTGATAAGCCTCTTGATATTGCTGTTTTAACCAGAATGAAACAATTCCGAGCAATGAACAAGCTAAAAAAAGTAGCTCTGAAGGTTATTGCTGAAAACCTTTCTGAAGAAGAAATTATTGGCTTGAAAGAAATGTTCAAATCCATGGACACAGATAACAGTGGAACAATCACATTCGAAGAGTTGAAAGCTGGTCTCCCAAAATTGGGTACTAAACTTTCCGAATCTGAAGTTAGGCAGTTGATGGAAGCGGCTGATGTAGATGGAAATGGAACCATTGATTACATTGAATTTATAACTGCTACCATGCACATGAATAGAATGGAAAGAGAGGATCACCTATATAAAGCCTTTGAATATTTTGACAATGATAAGAGCGGGTACATCACAATGGAAGAGTTGGAATCTGCCCTTAAGAAATATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCTGAAGTTGATACAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACATAACGCACATAACCCAAAGACGTCGCAAATAA 1557 0.4926 MGNCSSGAGAPTTYSDDHPHHNGITVLPPNSNPSPQLPKPPPTSSSSSSLGRVLGRPMEDVRSIYIFGRELGRGQFGVTYLVTHKATKEQFACKSIATRKLVNRDDIDDIRREVQIMHHLTGHRNIVELKGAYEDRHSVNLVMELCAGGELFDRIITKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLNKNDDSPLKATDFGLSVFFKPGDVFRDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWAENEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRADPKERLSAVEVLNHPWMRVDGDAPDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKLSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDNDKSGYITMEELESALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDITHITQRRRK* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1811 518 Gene3D Phosphorylase Kinase; domain 1 67 150 - -
Gso5g1811 518 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Gso5g1811 518 Gene3D - 331 507 - -
Gso5g1811 518 ProSiteProfiles EF-hand calcium-binding domain profile. 438 472 IPR002048 GO:0005509
Gso5g1811 518 Pfam EF-hand domain pair 441 503 IPR002048 GO:0005509
Gso5g1811 518 Pfam EF-hand domain pair 371 431 IPR002048 GO:0005509
Gso5g1811 518 Gene3D Transferase(Phosphotransferase) domain 1 151 329 - -
Gso5g1811 518 CDD STKc_CAMK 65 322 - -
Gso5g1811 518 ProSiteProfiles EF-hand calcium-binding domain profile. 473 508 IPR002048 GO:0005509
Gso5g1811 518 MobiDBLite consensus disorder prediction 1 53 - -
Gso5g1811 518 Pfam Protein kinase domain 67 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1811 518 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Gso5g1811 518 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1811 518 SMART efh_1 442 470 IPR002048 GO:0005509
Gso5g1811 518 SMART efh_1 477 505 IPR002048 GO:0005509
Gso5g1811 518 SMART efh_1 406 434 IPR002048 GO:0005509
Gso5g1811 518 SMART efh_1 370 398 IPR002048 GO:0005509
Gso5g1811 518 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Gso5g1811 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Gso5g1811 518 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Gso5g1811 518 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Gso5g1811 518 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Gso5g1811 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 509 - -
Gso5g1811 518 SUPERFAMILY EF-hand 362 504 IPR011992 -
Gso5g1811 518 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1811 518 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 37 509 - -
Gso5g1811 518 SUPERFAMILY Protein kinase-like (PK-like) 65 324 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1811 Gso-Chr5 41397086 41403187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1811 51 517 EF-hand Containing Proteins AT4G23650 79.872 0.0 807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso5g1811 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1811 K13412 - gmx:100777096 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0174 11 1439224 1443924 Gso5g1811 5 41397086 41403187 PCT