Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1808 ATGGAACAGAAAAGCATTCTGATATCGGCTTTGGGTGTTGGGGTGGGAGTGGGAGTGGGGATTGGATTGGCCTCTGGACAAAGCGTTGGAAACTGGGGAGCCAACACTTTCTCCTCAAACGCTATTACTGCTGAGAAGATGGAGCAGGAAATGCTCAGACAAGTTGTTGATGGAAGAGAAAGCAACGTCACTTTTGACAAATTCCCTTATTACCTCAGTGAGCAAACACGGGTTTTGCTGACAAGTGCGGCTTATGTCCATTTAAAGCATGCTGAGGTTTCTAAATATACACGTAATCTTGCTCCTGCAAGCCGGACTATTCTGCTTTCAGGGCCTGCAGAACTTTACCAACAGATGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAGTTGCTTCTGTTAGATTTAACTGACTTTTCATTGAAGATTCAGAGTAAATATGGTGGTTCTTCCAACATAGAATCTTCTTTCAAAAGATCCACTTCAGAGACTACTTTGGAGCGGCTATCTGATCTATTTGGGTCATTTTCAATCTTTTCACAAAGGGAGGAACCTAAAGTCAAAATGAACAGGCCTAGCAGTGGAGTGGACCTCCAATCAATGGGGGCTGAAGTATCTTTAAATCCTCCAACACTCCATAGGAATGCTTCTTCCTCTTCAAATATTAGTGGCCTTGCTTCGCAAACCAATCCCACCAATTCAGTTCCTTTGAAGCGCACAACCAGCTGGTCTTTTGACGAAAAGATTCTTATTGAGTCTCTTCATAAGGTTCTGGCTTTTGTGTCAAAAACCTATCCCATTGTGCTATATTTGCGGGATGTTGATAGGCTGTTATATAAATCACAAAGGATATATAACTTGTTCCAAAAAATGTTGAAGAAACTATCTGGACCGATTTTGATTCTTGGTTCTCGAGTTATAGATTCCGGTAATGACTATGAAGAGGTGGATGAGAAACTTAATTCGCTCTTCCCATACAACATAGAAATCAGGCCCCCAGAAGATGAATCACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCACTGATCTTGATTGTGATGACCTGGATTCCATTTGTGTTGCAGACACAATGATTCTCAGTAACTATATAGAAGAGATTATTGTGTCAGCAATTTCGTATCATTTGATGAAAAACAAAGACACTGAATACCGAAATGGGAAGCTTGTTATTTCTTCCAATAGTTTGTCCCATGCATTGAATATATTCCACAAGGGGAAATCCAGTAGAAGAGATGCATCAAAATTAGAAGATCATGCTGTAAAATCTGAGCAAAGAGAGGAAGGAACTGCTATGAAACCAGAAGTGAAGTCTAAAAATGCTGCTCCTGTAAAAAAGACTGAAGCAGAAATATCAACTTCAGTGGGAAAGGCAGGTGGTGAAAAATCAGTTCCTGCACCCAAAGCCCCTGAAGTTCCTCTTGATAATGAGTTTGAGAAGCAAATAAGGCCAGAGGTAATACCAGCAAATGAGATTGATGTCACATTCTCTGATATTGGTGCCTTAGATGACACCAAAGAATCCCTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCAGACCTTTTCACTGGAGGCCTTCTAAAGCCTTGTAGAGGAATATTGCTGTTTGGACCTCCTGGCACTGGGAAGACTATGCTGGCAAAGGCCATTGCGAAGGAGGCTGGAGCAAGTTTCATCAATGTGTCCATGTCTACCATCACCTCTAAATGGTTTGGTGAAGACGAGAAGAATGTTCGTGCTTTATTCACACTTGCAGCCAAGGTCTCCCCAACTATAATATTCCTGGACGAGGTTGATAGCATGCTTGGGCAACGGACCAGAGTTGGGGAGCATGAAGCAATGAGGAAAATAAAGAATGAATTTATGACCCATTGGGATGGACTTTTGACAAAGCAAGGGGAGCGGATCCTTGTTCTCGCTGCAACCAATAGGCCATTTGACTTGGATGAAGCTATTATTAGGCGATTTGAAAGAAGAATTATGGTAGAACTACCATCTGTGGAGAACAGGGAAAAGATTTTGAGGACTCTTTTGGCAAAAGAAAAGGTGGACAACGAACTTGATTTTAAGGAACTTGCAACTATGACAGAAGGATATACTGGAAGTGATCTAAAGAACTTGTGCACAACTGCTGCTTATCGGCCTGTTAGAGAGCTAATTCAGCAAGAGAGGCTAAAGAGTCTAGATAAAAAGCAGAAAGCTGCCAAGGGACAGAATAAAGATGTCCAAGAAAGTCAAGGAGGACAATCCATATTAGGAAATACTCAAGATGCTATAGATGGAGAAGAGGAAGTTAAACAGGAAAGAGTTATTACCCTTGGGCCATTGAATATGCAGGATTTCAAAGAGGCCAAAAATCAGGTTGCTGCAAGCTTTGCAGCTGAAGGGGCTGGAATGAGTGAGATGAAACAGTGGAACGATTTGTACGGAGAAGGTGGTTCAAGGAAGCAGCAGCAGTTGTCTTACTTCCTATGA 2562 0.4192 MEQKSILISALGVGVGVGVGIGLASGQSVGNWGANTFSSNAITAEKMEQEMLRQVVDGRESNVTFDKFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSKYGGSSNIESSFKRSTSETTLERLSDLFGSFSIFSQREEPKVKMNRPSSGVDLQSMGAEVSLNPPTLHRNASSSSNISGLASQTNPTNSVPLKRTTSWSFDEKILIESLHKVLAFVSKTYPIVLYLRDVDRLLYKSQRIYNLFQKMLKKLSGPILILGSRVIDSGNDYEEVDEKLNSLFPYNIEIRPPEDESHLVSWKSQLEEDMKMIQVQDNKNHIMEVLAATDLDCDDLDSICVADTMILSNYIEEIIVSAISYHLMKNKDTEYRNGKLVISSNSLSHALNIFHKGKSSRRDASKLEDHAVKSEQREEGTAMKPEVKSKNAAPVKKTEAEISTSVGKAGGEKSVPAPKAPEVPLDNEFEKQIRPEVIPANEIDVTFSDIGALDDTKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFLDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKQGERILVLAATNRPFDLDEAIIRRFERRIMVELPSVENREKILRTLLAKEKVDNELDFKELATMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKSLDKKQKAAKGQNKDVQESQGGQSILGNTQDAIDGEEEVKQERVITLGPLNMQDFKEAKNQVAASFAAEGAGMSEMKQWNDLYGEGGSRKQQQLSYFL* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1808 853 Gene3D - 694 774 - -
Gso5g1808 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 756 IPR027417 -
Gso5g1808 853 Gene3D - 53 351 IPR027417 -
Gso5g1808 853 Pfam AAA+ lid domain 716 753 IPR041569 -
Gso5g1808 853 MobiDBLite consensus disorder prediction 435 472 - -
Gso5g1808 853 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
Gso5g1808 853 Gene3D - 521 693 IPR027417 -
Gso5g1808 853 MobiDBLite consensus disorder prediction 215 234 - -
Gso5g1808 853 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
Gso5g1808 853 MobiDBLite consensus disorder prediction 759 788 - -
Gso5g1808 853 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 853 - -
Gso5g1808 853 MobiDBLite consensus disorder prediction 768 785 - -
Gso5g1808 853 CDD AAA 560 693 - -
Gso5g1808 853 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 853 - -
Gso5g1808 853 SMART AAA_5 558 695 IPR003593 -
Gso5g1808 853 MobiDBLite consensus disorder prediction 435 500 - -
Gso5g1808 853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 381 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1808 Gso-Chr5 41363383 41372051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1808 522 754 Calmodulin-binding Proteins AT3G56690 37.712 3.34e-42 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1808 - - gmx:100815589 1621.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1808 5 41363383 41372051 Gso8g0166 8 1582142 1588399 GST
Gso11g0175 11 1446778 1453364 Gso5g1808 5 41363383 41372051 PCT