Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1794 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAAAGAGGACTTTGGTCTCCTGAGGAAGATGAAAAACTCATCAGATACATTACTACTCATGGATATGGCTGTTGGGGTGAAGTTCCAGAAAAAGCTGGGCTTCTAAGGTGTGGCAAGAGTTGTCGCCTGAGATGGATTAATTATTTAAGACCCGATATTAGAAGAGGCAGGTTTACACCTGAGGAGGAGAAGTTAATTATAACTCTTCACGGGGTCGTGGGAAACAGATGGGCTCACATTGCAAGCCACTTGCCTGGTCGAACTGACAATGAAATAAAGAACTATTGGAACTCATGGATAAAAAAGAAGATAAGAAAGACTTCGGTGTCTTCAACCACCATTGCACAAAGTATCGATCACAATTCTTCCCACCAGTTCAATTACAATTCCAATCTAGTACTAGACCACTTTCCCAACCAAGATAACAATCTACAAACAAAACCTCCAGTTCAAGAAGCCTTGTTTTCCTCAACATGCCCTCTGTTCATATTTGACACTACTGATTCACTAGAACCTGGCACAGCAACAGACTGCAAGAGTAGTACTGTGCGAGCAGAACATTTTCATCAAGATGCTGTGGGTTTGAGCAGTGAAACATGGAACTCGAGCCACCATCAGGTTCATGCACTTCCACCTCTCACAGTGAGTGTAGGTTTGGACACCAGCAATTATTTGCCACCATTGATTGAGCACGTGGACAACATGGTCCCAATTGAGGTACAATCATGTACTATCGATGAGCAAGGAGATATAGCACTAGAGTGCTTGCAGAGGCAAGGGTTAAATGAATGGGTGGAAACGCAGCAACAATGTCCTAATTTTCTTTTTTGGGACAGTGTTGAAGGACAACTTGGTGGGGAAGAACTAGCACCAAATTCATCAAATGTGGAAGCAAATACGCTTTCTCCTTTTCCTTGTTCTTTGTGTGGAAGTATTCGCAGAACTTTGTTTCCCAATTTCCATTGCCTCCGCTTCCACCTCGCAACCATGATCATCCCGGAGAAGAACCGCAAGGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTCGCGAAGAAGGACTTCAATTTGGCCAAGCACCCTGAGATCGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGTTTCAAGTCTCGCGAGTACGTGAGAGAAACTTTTGCTTGGATGCACTATTACTGGTTCCTCACCAACGATGGCATCGAGTTTCTCAGAACTTACCTTAACCTTCCTTCCGAAATTGTCCCTGCTACTTTGAAGAAGCAAGCCAAGCCACCTGGCAGGCCCTTTGGAGGCCCATCCGGTGATCGCCCTAGAGGTCCACCACGCTTTGAAGGGGAGCGTAGGTTTGGTGGTGATCGTGATGGATACCGTGGAGGTCCCCGAGGAGGACCTGGTGGTGACTTTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCGCCAACCAGCTCAAATCTTCCCCAAGTATAA 1575 0.4686 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWGEVPEKAGLLRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIITLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKTSVSSTTIAQSIDHNSSHQFNYNSNLVLDHFPNQDNNLQTKPPVQEALFSSTCPLFIFDTTDSLEPGTATDCKSSTVRAEHFHQDAVGLSSETWNSSHHQVHALPPLTVSVGLDTSNYLPPLIEHVDNMVPIEVQSCTIDEQGDIALECLQRQGLNEWVETQQQCPNFLFWDSVEGQLGGEELAPNSSNVEANTLSPFPCSLCGSIRRTLFPNFHCLRFHLATMIIPEKNRKEICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPSGDRPRGPPRFEGERRFGGDRDGYRGGPRGGPGGDFGGDKGGAPADYRPSFGGPGGRPGFGRGSGGFGAPTSSNLPQV* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1794 524 Gene3D - 342 445 IPR036388 -
Gso5g1794 524 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso5g1794 524 CDD SANT 69 112 IPR001005 -
Gso5g1794 524 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso5g1794 524 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso5g1794 524 SMART sant 66 114 IPR001005 -
Gso5g1794 524 SMART sant 13 63 IPR001005 -
Gso5g1794 524 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso5g1794 524 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso5g1794 524 MobiDBLite consensus disorder prediction 453 469 - -
Gso5g1794 524 CDD SANT 17 61 IPR001005 -
Gso5g1794 524 Pfam Plectin/S10 domain 344 435 IPR005326 -
Gso5g1794 524 PANTHER 40S RIBOSOMAL PROTEIN S10 262 521 IPR037447 -
Gso5g1794 524 Gene3D - 6 66 - -
Gso5g1794 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso5g1794 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso5g1794 524 MobiDBLite consensus disorder prediction 432 524 - -
Gso5g1794 524 Gene3D - 69 139 - -
Gso5g1794 524 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 262 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1794 Gso-Chr5 41201919 41213389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1794 1 304 MYB Transcription Factor Family AT1G63910 50.852 3.35e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso5g1794 S10_plectin 9e-43 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1794 K09422 K02947 gmx:100803556 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1794 5 41201919 41213389 Gso8g0152 8 1423881 1431496 GST