Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1791 ATGAATAACCCTGTCCGACGACATGCCCCAGCTGCTGCAGTAGTTGCCAACAGAAGCACGTTCACGGGCACAAAGTCACTTCCAAAAAGAGGGCAGATTAAGTCCAAGATAGTGGCAGGGATATGTTGGACACGAGGCCCAAGGCCCAACATATTAGAAACAGAAAAAAAAAACATAATACCCGAAGAGCCCGACCCAATACCAATCAGTAAACAATCACACACGCCGCCCCTCTTACAGAACGGAGATCAGGTGTGGTCGGCGGCGGCACGAGGGAGGTTGGAAAGTGTCCGACACGGCGGATTTCGCTTGGGCTTCAGTGTCGCAGCACCCAAACGCTCCAACCGCGACTCTAAAACGCAACGTGACCGAGGTCTTCGTCGGGCCTCCGCTCCGGCCGCTATTTACTACTGTGGTGAATTTGGAAAATTCTCACTCTCGACGGAGGCGGATCTTCGTGCTCTCGACGCGGAGCCTCGCTCACTCACTCTCGAATGCGAAGCCTCACTCTTGAACTTCTCTCTCTGCTGTATAAACATTCTAGTTATGGAAGATTCTGATCAACCAGCCAAATCTGCTGAAAACCAGCAAACTGAACAAGTGTGTAGTTTTTTCAGAAAGCCAGTTAATAAAAAGAATATAAGGAAACGAACTATTGTTAATGAAGATAATGAGGAGGACTCAAACAATGAAACTTCTCTGTTGCATATTCAGAAGAAGACCTTAAAGCCTGATAATAAGTTGTACTTTTCCACTGGTTCTTCAAAAAGCTCTGCATCTGCTGAACCCAGTGAAGAACCAGGAAAACCAGTCTTTCAGTTCGAGTCTTCAAAAGAGATTCAAGTTCAGCATGATAGCAAAGCAACTGCAACACTAGAGACCGAGACTGAGTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCAGAGGAGAGTCTGAAAGGGAAAAGCCCAAGTTCTAAGAATGAAAAATTATATAAGGGAATGAACAGTTACAAAGACTACAAGGCTGGCTTTCGTAGGGAGCAAACAATTGCTAGTGAAAAAGCTGGCGGGTCACATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCGAGGTTTGATTATCAGCCTGACATATGTAAGGATTATAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGACTACAAGTCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGAGAGGATGCAGATGAGGAGGGTGCTAATTTGACTGATGAAGATGATGAGGATTCTTTACCATTTGCCTGTTTCATTTGTAGAAACACTTTTGTGGATCCTGTAGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACTCTTGGCATTTTTAACGTTGCTCATGAGATACGCAGGAAGATGGCCGAGGATAAATCATAA 1536 0.4525 MNNPVRRHAPAAAVVANRSTFTGTKSLPKRGQIKSKIVAGICWTRGPRPNILETEKKNIIPEEPDPIPISKQSHTPPLLQNGDQVWSAAARGRLESVRHGGFRLGFSVAAPKRSNRDSKTQRDRGLRRASAPAAIYYCGEFGKFSLSTEADLRALDAEPRSLTLECEASLLNFSLCCINILVMEDSDQPAKSAENQQTEQVCSFFRKPVNKKNIRKRTIVNEDNEEDSNNETSLLHIQKKTLKPDNKLYFSTGSSKSSASAEPSEEPGKPVFQFESSKEIQVQHDSKATATLETETEFSKDARAIRERALKQAEESLKGKSPSSKNEKLYKGMNSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKARKMRLAAGEDADEEGANLTDEDDEDSLPFACFICRNTFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDKS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1791 511 PANTHER ZINC FINGER PROTEIN 183 192 510 IPR039971 -
Gso5g1791 511 ProSiteProfiles Zinc finger C3H1-type profile. 374 402 IPR000571 GO:0046872
Gso5g1791 511 SMART ring_2 451 488 IPR001841 -
Gso5g1791 511 ProSitePatterns Zinc finger RING-type signature. 466 475 IPR017907 -
Gso5g1791 511 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 375 400 IPR000571 GO:0046872
Gso5g1791 511 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 192 510 - -
Gso5g1791 511 SUPERFAMILY RING/U-box 450 493 - -
Gso5g1791 511 SMART c3hfinal6 374 401 IPR000571 GO:0046872
Gso5g1791 511 MobiDBLite consensus disorder prediction 248 270 - -
Gso5g1791 511 ProSiteProfiles Zinc finger RING-type profile. 451 489 IPR001841 -
Gso5g1791 511 SUPERFAMILY CCCH zinc finger 373 405 IPR036855 GO:0046872
Gso5g1791 511 MobiDBLite consensus disorder prediction 248 262 - -
Gso5g1791 511 Gene3D - 372 406 - -
Gso5g1791 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 508 IPR013083 -
Gso5g1791 511 CDD RING-HC_RNF113A_B 449 489 - -
Gso5g1791 511 Pfam Zinc finger, C3HC4 type (RING finger) 450 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1791 Gso-Chr5 41170005 41175273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1791 189 511 C2H2 Transcription Factor Family AT1G01350 69.040 6.36e-164 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso5g1791 zf-C3HC4_3 7.2e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1791 K13127 - gmx:100787434 644.039