Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1789 ATGGCTCGACAATTGTGTGAAGAAAAGTCCAAGGACATGGCTTCATCAAGTCATGGGTTGTTCTACTCAGATGTATCATCCAATAACCCAACTATCCAACCCCATCTGATGAACCACATCCAAGGCTTTGTGACCGACCCGGACATGTTCAACCTCACCACAGGTATGGATATGATAGGGTTTTCAAAGAACCTTCAGCAACACAGCGAAAGCAACGGTGTCATGATGTGGAAAAGTTTCTTCGGCAAACCAGGTCAACTCGCGGGTTCTTCCTCTTCCAAAACGATGAACGGGTCTTGTAGCAATTTTTATAACCAGCATGCTGATGCGTATAATACTAATAAGCAAGACTTCACATCAGGGATTTCTGAGACAAGTAGCGAGAACTTAGTTGTCGGTGGTGCCCATGATTCTGCCCCGTGGCAAGAGAACAGGCTAATGGTTGATGATTCTTCCTTAAGGTGCGTGTTCCCTTGTGAAGGTAACCAAAGGCCCAGTCAAGGCCTTTCACTCTCTCTTAGTTCAACCAACCCTTTAAGTATTGGCTTGCAATCGTTTGAGCTAAGACAAACAAGCCATCATCAGCATCTTTCTGATTTTGTTTCAAGAGAGGGTTTTTTCGGAAAACCAGTCAATGCTCAACAGCAGCAACAACAAATGTTGCAAGATGGGTATTTGAGTCCTAGCAAAGGTGCAAATATTTATCAGGGACATTTTCTAATCAAGAACTCCAAGTTCTTGGTGCCTGCACAGGTCCTTCTGAACGAGTTTTGTAGCCTAGGGACAAAGGAAAATGATGTACTACCAAAGCAAAAGTGCTCTCAAAAGAACAAGCAGTGGGAAGAAGGTAATAGCGGTGGTGGTTCCTCAAAGAACCATTCTCTTAGCTCTCTAGAGTATGTGGAATTGCAGAAGAGAAAGACAAAGCTGCTCGCGATGCTGGAAGAGGTTGATAGAAGATACAAACACTACCGTAACCAAATGAAGGCTGTGGTGTCCTCCTTTGAAGCAGTGGCGGGTAATGGTGCAGCCACTGTTTACTCGGCTCTGGCTTTGAAAGCCATGTCAAGACATTTTAGGTGTTTGAAGGATGGAATTATGGATGAAATTGAAGCCACAAGAAAAGGCATGGGAGAGAAAGACCACGTAGCGGCAGTACCCGGCACAACAAGGGGCGAAACACCAAGGCTTAGAATCGTTGACCAATCGCTGAGACAACAAAGGGCCTTTCAGCAAATTAGCATCATGGAAACCCATCCTTGGAGACCCCAACGTGGCCTTCCCGAACGTTCCGTTTCTGTTCTTCGAGCTTGGCTTTTTGAGCACTTTCTCCATCCGTACCCAAGCGATGTTGATAAACATATCCTAGCCCGCCAAGCCGGTCTCTCCAGACGTCAGGTTTCGAATTGGTTTATTAACGCGAGGGTGAGGCTATGGAAGCCGATGGTGGAGGAAATGTATCTGGAAGAAGAGAAGGAGCAAGAAAACGACGTAGCATCATCGGATATTAATGTTCCCGAAGAGGATGAGAAGCCAACGCAGGAGGCTCCACTCCTTCGAATTGACTCAGAGTGCATGTCGTCTATCGTCAACGACGTCACAAAGAGCGGCAAAACCATCCAAAACGACAACCAAATGGACGCATTCGGGTCGGTGGAGCTTGACTTTTCGTCCTACACGCATGCGCACCATTCTTCCGGCGTGTCGTTGACGCTGGGGTTACAGCAGCACGGTGAAAGCGGGGTAAGTTTAGCGTTCCTGCCAGCGGCAACACAGAGCTCGATGTTTTACCCACGGGATCAGATTCAAGAGTGTCAAACAGTTCAGTACTCTCTTTTGGATGCCGAAGGACAAAACATGCCGTTTAGGAATGTCATGGGGACACACTTGCTTCATGATTTGGTATGA 1908 0.468 MARQLCEEKSKDMASSSHGLFYSDVSSNNPTIQPHLMNHIQGFVTDPDMFNLTTGMDMIGFSKNLQQHSESNGVMMWKSFFGKPGQLAGSSSSKTMNGSCSNFYNQHADAYNTNKQDFTSGISETSSENLVVGGAHDSAPWQENRLMVDDSSLRCVFPCEGNQRPSQGLSLSLSSTNPLSIGLQSFELRQTSHHQHLSDFVSREGFFGKPVNAQQQQQQMLQDGYLSPSKGANIYQGHFLIKNSKFLVPAQVLLNEFCSLGTKENDVLPKQKCSQKNKQWEEGNSGGGSSKNHSLSSLEYVELQKRKTKLLAMLEEVDRRYKHYRNQMKAVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGIMDEIEATRKGMGEKDHVAAVPGTTRGETPRLRIVDQSLRQQRAFQQISIMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQAGLSRRQVSNWFINARVRLWKPMVEEMYLEEEKEQENDVASSDINVPEEDEKPTQEAPLLRIDSECMSSIVNDVTKSGKTIQNDNQMDAFGSVELDFSSYTHAHHSSGVSLTLGLQQHGESGVSLAFLPAATQSSMFYPRDQIQECQTVQYSLLDAEGQNMPFRNVMGTHLLHDLV* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1789 635 SMART prehox3 235 368 IPR006563 -
Gso5g1789 635 CDD homeodomain 421 482 IPR001356 GO:0003677
Gso5g1789 635 Pfam Homeobox KN domain 438 477 IPR008422 GO:0003677|GO:0006355
Gso5g1789 635 ProSiteProfiles 'Homeobox' domain profile. 418 481 IPR001356 GO:0003677
Gso5g1789 635 MobiDBLite consensus disorder prediction 490 514 - -
Gso5g1789 635 SMART HOX_1 421 485 IPR001356 GO:0003677
Gso5g1789 635 Pfam Associated with HOX 241 366 IPR006563 -
Gso5g1789 635 Coils Coil 300 327 - -
Gso5g1789 635 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 591 - -
Gso5g1789 635 Gene3D - 424 486 - -
Gso5g1789 635 MobiDBLite consensus disorder prediction 272 293 - -
Gso5g1789 635 MobiDBLite consensus disorder prediction 278 293 - -
Gso5g1789 635 SUPERFAMILY Homeodomain-like 422 487 IPR009057 -
Gso5g1789 635 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 1 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1789 Gso-Chr5 41149249 41153163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1789 122 635 Homeobox Transcription Factor Family AT5G41410 47.257 7.39e-135 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso5g1789 POX 8e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1789 - - gmx:100787954 1244.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1789 5 41149249 41153163 Gso8g0147 8 1371936 1375971 GST
Gso11g0192 11 1600079 1604176 Gso5g1789 5 41149249 41153163 PCT