Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1787 ATGGGTTTCCCAGTGGGGTACTCGGAGCTCCTCTTCCCGAAGCTTCTCCTTCACATCCTCTCCCTCCTGGGCCTCCTCAGGAAGCTGATTTGCAGCCTCCTCCGCTTCATGGGCCTCCACGACTTCCTCGAGCCCGACATTGCCTGGGCCGAAACCCAGACCCGAGTGCCCGAAGAGTTCGAATCCGTGTCGGCCACGCTCATCCGGGAAATCCTGCCGGTGGTGAAGTTCCGGGAGCTGGTGGATCCCCCGGAGACGTGCGCGGTGTGTCTGAGCGAGTTCGAGGAAAACGATGAGATCAGACGGCTGGCGAATTGTCGTCACATATTCCACCGAGGATGTTTGGACCGTTGGATGGGGTACGATCAGAGAACCTGCCCTCTTTGCAGAACGGCCTTTATACCGGACGAAATGCAAGGTGCTTTTATTCAGAGACTCTGGGCTGCCTCTGGGATCGCTGATCCTTTGTAG 471 0.5796 MGFPVGYSELLFPKLLLHILSLLGLLRKLICSLLRFMGLHDFLEPDIAWAETQTRVPEEFESVSATLIREILPVVKFRELVDPPETCAVCLSEFEENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTAFIPDEMQGAFIQRLWAASGIADPL* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1787 156 SMART ring_2 87 129 IPR001841 -
Gso5g1787 156 CDD RING-H2 87 130 - -
Gso5g1787 156 ProSiteProfiles Zinc finger RING-type profile. 87 130 IPR001841 -
Gso5g1787 156 PANTHER BRH1 RING FINGER PROTEIN 1 154 - -
Gso5g1787 156 SMART ringv_2 86 130 IPR011016 GO:0008270
Gso5g1787 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 135 IPR013083 -
Gso5g1787 156 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 154 - -
Gso5g1787 156 Pfam Ring finger domain 86 130 IPR001841 -
Gso5g1787 156 SUPERFAMILY RING/U-box 67 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1787 Gso-Chr5 41117091 41117934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1787 1 151 C3H Transcription Factor Family AT1G63840 57.051 4.07e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1787 K16281 - gmx:100789020 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1787 5 41117091 41117934 Gso8g0145 8 1342860 1343710 GST
Gso11g0194 11 1635088 1636236 Gso5g1787 5 41117091 41117934 PCT