Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1785 ATGTCTTCTGATCTCTATGCTTTTGACACTACCTTTTACACACATTCAAACTCAGACTCGGTTTCCTCTGATGGAGTTGGAGACCTTCCTTTTCTCTCGGAATCTTTTCCTTTCTTCGCCAATTCTCAAGAGAATTCCAATGCTCTTTATAATTCCCTCGACCCGTTTTCCCCTTCTTTTTTCTCTTTCTCACCTCCAAGTTCCCACTTGGAAAGCCTTAGCCTTTACCATGCTAACCACGTGCAGCCTCTGTCAAATGGCCAAAACTTGGCAAATGAATTTGGAAGCTTCTCAGCTTTTGATGGGTCTGAAGTGAAAACTGAGGAATGCCAAATGGGTGTTGATTATGTCTACGGTCAGCAACTCCTTCCTCACAGTCACAGTTATAGTGGTGCTGAGAATTTTTCCAAGTACATGCTGAGGAGCTTCAGCAGCAACTCCTACGAAGGGAAACCTTACAGTGACACTCGCGAGGATTCTACAAAATTTCAAAGCCATGAGATGAGTTCCCCTGAAGACACTGTCTTTGGTGGACAAATGAGAAGGGTTTGCAGCACAGGAGATTTGCAGAACATGAAGGGAAATCACATGTCTCCAACGGAGGCGCCGTTGTTGGAGGAATCGAACTTCAAAGTAGGGCGTTACAGTGCCGAGGAAAGAAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAACCCAGAGGAACTTCAACAAAACCATTAAGTATGCATGCCGAAAGACACTTGCAGATAATCGACCACGCATACGTGGTAGATTTGCCCGCAACGACGAGGCCAGCGAAACTCCCAAGGTTTCATGTTCCACCCGAGATGAAGATGATGTCGATTTCTGGATGGAAGAATTGCGATTGCATGAAGAGCAAGACGATGTAACAGTGGTAACAGAACAGTATTTAATTGAGAAATTATGGAGCTAG 936 0.4434 MSSDLYAFDTTFYTHSNSDSVSSDGVGDLPFLSESFPFFANSQENSNALYNSLDPFSPSFFSFSPPSSHLESLSLYHANHVQPLSNGQNLANEFGSFSAFDGSEVKTEECQMGVDYVYGQQLLPHSHSYSGAENFSKYMLRSFSSNSYEGKPYSDTREDSTKFQSHEMSSPEDTVFGGQMRRVCSTGDLQNMKGNHMSPTEAPLLEESNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRIRGRFARNDEASETPKVSCSTRDEDDVDFWMEELRLHEEQDDVTVVTEQYLIEKLWS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1785 311 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 298 IPR045281 GO:0009909
Gso5g1785 311 ProSiteProfiles CCT domain profile. 220 262 IPR010402 GO:0005515
Gso5g1785 311 MobiDBLite consensus disorder prediction 152 166 - -
Gso5g1785 311 Pfam CCT motif 220 262 IPR010402 GO:0005515
Gso5g1785 311 PANTHER CCT MOTIF FAMILY PROTEIN 8 298 - -
Gso5g1785 311 MobiDBLite consensus disorder prediction 148 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1785 Gso-Chr5 41104827 41107253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1785 216 271 C2C2-CO-like Transcription Factor Family AT5G24930 48.214 1.08e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso5g1785 CCT 8.9e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1785 - - gmx:102665661 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1785 5 41104827 41107253 Gso8g0143 8 1323952 1326223 GST
Gso11g0196 11 1642440 1644682 Gso5g1785 5 41104827 41107253 PCT