Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1783 ATGGGCGGTTGCTGTTGTTGTTGTTCTTCTAAGGAGACTGTGTTGAGCGCTCCACCTGCGTACTACTATTATCCAAGAGCATCAGAAGAGCATGTTCCTCTATCTTCTCACCCGGGTGCTGCTTCTGCTTTCTCTGGGCGGCTATTGGTTGATACTAATCTAGATACTTCATCTCCTGATACTTATAGACCTCCTCCTGCTCCTATCCCTTTCAATGTTACCTTAGGTACCACTCAAACTCCACCTGCGGCTCAAGAAATTCGTAGTGACAAGAATAATACTTCCTTGCCTTCTACAAATTCTAATGCAATTCAAGAACCAGTTGCTAGAGACATTCATGGGACCTCAGCTAAGTTGGAAGAGCCGAAGGAATCCGAGTGCAAAGTTCAGACTGATCTGGAGCTAGATTCTGCAAAGGGTTCCGAAATTGAACTTGCTAAGTCGGGGAAACCTATAGATTTAGTGGAAGAGGAAGATGCATGCCCAATCTGTTTAGAAGAATATGATGCAGAGAATCCAAAACTCGCAACAAATTGTGACCATCATTTTCACCTTGCATGCATTCTGGAATGGATGGAAAGAAGTGAAACTTGCCCTGTGTGCGATCAGGATTTGGTTTTCGACCCTCCCATTGAATAA 639 0.4413 MGGCCCCCSSKETVLSAPPAYYYYPRASEEHVPLSSHPGAASAFSGRLLVDTNLDTSSPDTYRPPPAPIPFNVTLGTTQTPPAAQEIRSDKNNTSLPSTNSNAIQEPVARDIHGTSAKLEEPKESECKVQTDLELDSAKGSEIELAKSGKPIDLVEEEDACPICLEEYDAENPKLATNCDHHFHLACILEWMERSETCPVCDQDLVFDPPIE* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1783 212 Pfam Ring finger domain 160 201 IPR001841 -
Gso5g1783 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 207 IPR013083 -
Gso5g1783 212 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 212 - -
Gso5g1783 212 SMART ring_2 161 201 IPR001841 -
Gso5g1783 212 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Gso5g1783 212 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 212 - -
Gso5g1783 212 CDD RING-H2 161 201 - -
Gso5g1783 212 SUPERFAMILY RING/U-box 155 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1783 Gso-Chr5 41085540 41088530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1783 1 208 C3H Transcription Factor Family AT5G41350 54.028 2.15e-70 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1783 - - gmx:100790079 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1783 5 41085540 41088530 Gso8g0141 8 1300493 1303595 GST