Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1782 ATGGAAGAATGGCCGACATTCTCAAATGGGTCTTCCTTAGATTGCCTTGGAGGAGTTGAAACTGTTGGTGCATTTCCTGGAAATGTTTGTTGCCCTGGAAAGGACCACGTGGATAATGGTGCTGACCATGGCAAACTTAAACAGAAGTACTTGTTCTACCAACTTTTCCCTGCTTACCTGAAGGATAGTTGTTCCATGGATGGTGTTCGACCTCTGCCGGTTTTAGTCGACGGTCAACAGCTGGATTTGTACAAACTGTTCTCCCTGGTGAAGGAAAGAGGTGGGTATGCCCGAGTGTCGAAGAAAGGATTGTGGGGTTCTGTGACCAAGGAATTGGGCTTGAACCCTGTGGTTTGCTGGTCTGTAAAATTAGTTTTTGACAAGTATCTGAATGATTTCGAGAGGTGGCTCAAGAAAACTTTTGAAGAGAAGAATTTAAAAAATGGGAACCATGGGTGTGATTGGGGTTTAAAGTTGTTGCCTTTGGATATTGAGAAAGAGTTTAGAGCCCTGTTATGTTCAAATCTAAAGGACAAAGATGATGATAGACTTGTCAAGTCAAAATCAATTAAAAAAAAGAAAAATGCTGATTTGGTTAACCACAAGAATGGTAATAATCTGTTGGACACCAACGACCAAAATAATAAATCCAAGGATGTCCAACGCATTGAAGGTGATAATGATGAAAAATCCGCCAATGGCATTAAGGGCAATCCTGCTACCTTGGGTGCAGAAGGTGCTGAGAAGGAATTTAACCCGCGCAAACGCAAACGGGATGTATTATTTGGCATGCTAAACTGGATGAAGCATATTGCAAAGCATCCTCTTGATCCTTTAACTCAACCAATACCTAAACCATCAAAGTGGAAGGAATATAATGGCCAGGACTTTTTTGGTCAATTTCTGAGGGCAAGAGAGGCTCTATCACTGAGACAGCATGAAGAACCAAACAGTGGATCGTCTTCTTTGCAGAAACAGAAGATGCACCCTGCTATGTATGAGGATCATGTTGCTTTTGGTCGCCCTGCTACAGGAAAATTGAGATGCAGTGAAAGGCTGCCTTCCTTTGTTAAATCTCGGTCGTGCTCGTGCTGCAATCCATGTTCCCCCAACGGAAATAGATTGGCAGGCTCACACAATATGGAGGCAGAAAAATGTCCTCCGGAGAAAACAACTGAAACACTAGATGTTTCGACCACAAAAACAATAGCTGAACCATCTGGGGATGAGTCTCTCGAAAAGCAAGTTTCTGTGGGTCCTCGTTTTCAAGCAGAAGTCCCAGAATGGACTGGTGTAGTTTCTGAGAGTGACTCTAAATGGTTGGGCACACAAGTATGGACTTTGAAAAATGACACAGAACATGCTACGGAAACAGATATTGGGAAAGGAAGACAAGAAAAGTGTAGCTGTGAATTTCATGGTTCTGTTGAATGTGTTAGATTACATATTGCTGAAAATAGGATGAAATTGAAGCTTGAATTGGGTTCTGAATTTTACCGTTGGGGATTTGATCGTATGGGTGAGGAAGTTTCACTTCAATGGACAACTGAAGAAGAAAAGAGATTTAAGGATATCATGAAATCAAATATTCCCTCCAAAAATAAATATTTTTGGAACAATCCATCCAAATACTTTCCAAAGAAAACAAGAAGAAACTTGGTGAGCTATTACTTCAATGTATTTCTTATTCAACTAAGAACCTATCAGAATCGGGTGTCTCCAAAGAGCGTTGATAGTGATGATGATGAAGTAGAATTTGGATCTTTTAGCGATGGTTTTGGGATGGAAGCCGTCAAGGGTCCTGATGATGATTTCCTGGAATGTTCTCTGAACAAGCAGTGCACAGATTTCGAATAG 1857 0.412 MEEWPTFSNGSSLDCLGGVETVGAFPGNVCCPGKDHVDNGADHGKLKQKYLFYQLFPAYLKDSCSMDGVRPLPVLVDGQQLDLYKLFSLVKERGGYARVSKKGLWGSVTKELGLNPVVCWSVKLVFDKYLNDFERWLKKTFEEKNLKNGNHGCDWGLKLLPLDIEKEFRALLCSNLKDKDDDRLVKSKSIKKKKNADLVNHKNGNNLLDTNDQNNKSKDVQRIEGDNDEKSANGIKGNPATLGAEGAEKEFNPRKRKRDVLFGMLNWMKHIAKHPLDPLTQPIPKPSKWKEYNGQDFFGQFLRAREALSLRQHEEPNSGSSSLQKQKMHPAMYEDHVAFGRPATGKLRCSERLPSFVKSRSCSCCNPCSPNGNRLAGSHNMEAEKCPPEKTTETLDVSTTKTIAEPSGDESLEKQVSVGPRFQAEVPEWTGVVSESDSKWLGTQVWTLKNDTEHATETDIGKGRQEKCSCEFHGSVECVRLHIAENRMKLKLELGSEFYRWGFDRMGEEVSLQWTTEEEKRFKDIMKSNIPSKNKYFWNNPSKYFPKKTRRNLVSYYFNVFLIQLRTYQNRVSPKSVDSDDDEVEFGSFSDGFGMEAVKGPDDDFLECSLNKQCTDFE* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1782 618 SMART ARID_2 43 134 - -
Gso5g1782 618 CDD ARID 52 134 - -
Gso5g1782 618 SUPERFAMILY ARID-like 54 138 IPR036431 GO:0003677
Gso5g1782 618 Pfam ARID/BRIGHT DNA binding domain 56 134 IPR001606 GO:0003677
Gso5g1782 618 ProSiteProfiles ARID domain profile. 46 138 IPR001606 GO:0003677
Gso5g1782 618 SMART bright_3 47 139 IPR001606 GO:0003677
Gso5g1782 618 MobiDBLite consensus disorder prediction 215 231 - -
Gso5g1782 618 MobiDBLite consensus disorder prediction 195 243 - -
Gso5g1782 618 Gene3D - 34 148 IPR036431 GO:0003677
Gso5g1782 618 MobiDBLite consensus disorder prediction 200 214 - -
Gso5g1782 618 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 618 - -
Gso5g1782 618 ProSiteProfiles ELM2 domain profile. 414 460 IPR000949 -
Gso5g1782 618 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1782 Gso-Chr5 41072206 41079979 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso5g1782 ARID 8.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1782 - - gmx:100819320 1263.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1782 5 41072206 41079979 Gso8g0140 8 1290480 1297794 GST