Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1774 ATGGAGAGCAAAGAGGAAGATGTAAGGGTTGGAGCAACTAAGTTCTCAGAAAGGCAACCAATTGGTACAGCAGCTCAGGGTGACAAGGACTACAAAGAACCACCCCCAGCACCTTTGTTTGAGCCTGGTGAGCTAAAGTCATGGTCCTTCTACAGAGCTGGAATTGCTGAGTTTGTGGCCACTTTCTTGTTCCTCTACATTACCATCTTAACTGTCATGGGTGTCAACAGGTCACCCTCCAAGTGTGCCTCTGTTGGCATTCAAGGCATTGCTTGGGCCTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATTTCAGGGGGACACATCAACCCAGCTGTGACCTTTGGTCTCTTTTTGGCAAGGAAGCTGTCCCTCACAAGGGCGCTGTTCTACATTATCATGCAGTGTCTTGGAGCCATCTGTGGGGCTGGTGTGGTGAAGGGATTTGAGGGCAATGCTAGGTATGAGATGTTCAAAGGTGGAGCCAATTTTGTGAATTCTGGATACACCAAGGGTGATGGACTTGGAGCTGAGATTGTTGGCACTTTTGTTCTTGTCTACACCGTTTTCTCTGCCACTGATGCCAAGAGAAACGCTAGAGACTCACACGTTCCTATTTTGGCTCCACTTCCCATCGGATTTGCTGTGTTCTTGGTCCACTTGGCTACCATTCCCATCACAGGAACTGGCATTAACCCAGCTAGGAGTCTCGGAGCTGCCATCATCTACAACAGAGACCATGCATGGGATGACCAATGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCCCTTGCTGCTGTGTATCACCAGATAGTCATCCGAGCCATCCCTTTCAAGACAAGGGCTTAG 864 0.4919 MESKEEDVRVGATKFSERQPIGTAAQGDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVNRSPSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAICGAGVVKGFEGNARYEMFKGGANFVNSGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDQWIFWVGPFIGAALAAVYHQIVIRAIPFKTRA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1774 287 PANTHER AQUAPORIN PIP1-3 1 286 - -
Gso5g1774 287 TIGRFAM MIP: MIP family channel proteins 56 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1774 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Gso5g1774 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Gso5g1774 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1774 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1774 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1774 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1774 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1774 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1774 287 MobiDBLite consensus disorder prediction 1 33 - -
Gso5g1774 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
Gso5g1774 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Gso5g1774 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1774 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1774 Gso-Chr5 40998872 41000528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1774 1 287 Major Intrinsic Protein MIP AT3G61430 86.760 4.38e-178 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1774 K09872 - gmx:121174914 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1774 5 40998872 41000528 Gso8g0131 8 1217168 1218918 GST