Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1770 ATGGTGCCAGAGAACTTGAAGAAACAACTTGCTTTGGCTGTGAGAAGCATCCATTGGAGCTATGCAATCTTCTGGACTGATTCAACTACCCAACCCGGGGTGTTGAGCTGGGGGGAAGGGTATTACAATGGAGACATTAAGACTAGGAAAACAAGTCAAGGAGTAGAGCTCAATTCTGACCAAATAGGGTTGCAGAGGAGTGAACAGCTGCGAGAACTATTCAAATCCCTCAAAACTGTAGAAGTCAGCCCTCAAACTAAAAGGCCTTCAGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCATATTCAACATTGGCCAAGGGTTACCAGGAAGAACTCTAGCGAAGGGTCAATCCATTTGGCTGAACAATGCCCATTCTGCTGATTGTAAAATTTTTAGCCGTTCTCTTCTGGCAAAGAGTGCGTCCATTGAGACGGTTGTGTGCTTTCCGTTTAGGGAAGGGGTTATTGAGCTAGGTACTACTGAACAGGTCTCAGAAGATTTGAGTGTCATTGAACGGATCAAAACTTCTTTCTTGAACAGTCTGCATGTCGATGTTCCCAATAAGTCAGTAGCTACATTGAAATCAAGGAAACAGGAAGATCTTTCTTATGTAGCATTTGATCATAATGACTATAATGTTGAATCGATTCCAGAAGTTGGGTATGAAATAGCCAACACAACCTCTCCTAATGGTAGTTCAAATGCAATCCAAGCCAATCAACCACTAGATGACACACTTATGGTTGAAAGTATAACCAATGGCACTTCTCAAGTCCAAAACTGGCAAGTTATTGATGATGAATTGAGTAACTGTGTCCATAACTCCATGAATTCCAGCGACTGTATATCACCAACTTTTGCCAGCCTTGAGAATATTGCTTCTGCCCCCAAGTGTAACAACCCTTCTGATCCTTGTGCCCGAGATTTTCAAAAGTGCAACAACCCAAAAATGACCTTAGTGGATCCTCGAAGTGATGAGTGGCATTATCAGAGAGTTATTTCCACCCTTATAAAAAACACTGACCAGTTACTTATGGGAATGCATTTGCAAAAATTTCCTCAGGCATCAAGCTTTGTTAGTTGGAGGAAAGGAGAGCCAATGGATTCCCAATGGCCAAGAGCAGGAACCTCACAAAAGTTATTGAAGAAAGTATTGTTTGAAGTTCCTCAAATGCACTTGGATGGGCTTCATGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAATGAGAGTAGAAGCTGATGAAAACGGCATGAACCATGTTATGTCAGAAAGGAGGAGAAGAGCAAAACTAAATCAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCGATACTAGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGGATAAACGAGTTGGAAGCTCACAGGGGTGTAACAGATATAGAGACTGGGACTAGAAGATCACCACAAGATACGGTGGAGAGGACTCCTGATCATTATTTTAGCAAAAATAATAATAATAATGGTAAAAAACCAGGGATGAAAAAGAGGAAGGCTTGTGGTGTAGATGAGAAAGGAAGAGAGATTAATTTAGATGCTTTAAAAGGCAGTTATGCTAATGATGTTATTGTGAGTACCAGTGACAATGGAATTGTGATCGAAATGAAGTGCCCCTCGAGAGCAGGAAGGATGCTAGAAATTATGGAAGCAATTAACAGTTTCAATATAGATTTTAGTTCAGTTCAGTCAACAGAAGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGCTCACAGGACCAAGGGTTGCAACAGCCAAAAGAATCAAACTAGCACTACAAAAAGTGGCTTCCAAGTGCTGA 1896 0.4098 MVPENLKKQLALAVRSIHWSYAIFWTDSTTQPGVLSWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTVEVSPQTKRPSAALSPEDLTDAEWYYLVCMSFIFNIGQGLPGRTLAKGQSIWLNNAHSADCKIFSRSLLAKSASIETVVCFPFREGVIELGTTEQVSEDLSVIERIKTSFLNSLHVDVPNKSVATLKSRKQEDLSYVAFDHNDYNVESIPEVGYEIANTTSPNGSSNAIQANQPLDDTLMVESITNGTSQVQNWQVIDDELSNCVHNSMNSSDCISPTFASLENIASAPKCNNPSDPCARDFQKCNNPKMTLVDPRSDEWHYQRVISTLIKNTDQLLMGMHLQKFPQASSFVSWRKGEPMDSQWPRAGTSQKLLKKVLFEVPQMHLDGLHESQEENDYKEGMRVEADENGMNHVMSERRRRAKLNQRFLTLRSMVPSISKDDKVSILDDAIEYLKKLERRINELEAHRGVTDIETGTRRSPQDTVERTPDHYFSKNNNNNGKKPGMKKRKACGVDEKGREINLDALKGSYANDVIVSTSDNGIVIEMKCPSRAGRMLEIMEAINSFNIDFSSVQSTEADGNLYLTIKSVLTGPRVATAKRIKLALQKVASKC* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1770 631 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 430 489 IPR036638 GO:0046983
Gso5g1770 631 MobiDBLite consensus disorder prediction 493 528 - -
Gso5g1770 631 Pfam Helix-loop-helix DNA-binding domain 431 477 IPR011598 GO:0046983
Gso5g1770 631 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 189 IPR025610 -
Gso5g1770 631 PANTHER TRANSCRIPTION FACTOR TT8 3 627 - -
Gso5g1770 631 Coils Coil 466 493 - -
Gso5g1770 631 PANTHER TRANSCRIPTION FACTOR EGL1 3 627 - -
Gso5g1770 631 SMART finulus 433 482 IPR011598 GO:0046983
Gso5g1770 631 MobiDBLite consensus disorder prediction 493 509 - -
Gso5g1770 631 Gene3D - 421 489 IPR036638 GO:0046983
Gso5g1770 631 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 427 476 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1770 Gso-Chr5 40939726 40944320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1770 2 631 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 45.672 6.19e-176 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g1770 bHLH-MYC_N 6.4e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1770 - - gmx:100795524 1251.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1770 5 40939726 40944320 Gso8g0127 8 1182354 1186553 GST