Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1760 ATGGATGGGAGAGAAGCTATGGCATTCTCTGATGGCTCAGCTCCATATTACATGCATAGAGTAGGGGTTGGAGGGTCTGGCTCTGGTTTCCAACCAGCCCCTGGGTTCAGACCTTTGTCAAACACTGGCATTCAAGCTGAGTCAAATGCAAGGGGTGGTCAGGGTCAGGGTGGTGGTTCTGTAGGGTCTAATTCCCCTTTTTCAGTGGAGCCACCTCAGGGTCATGCCAATTTTAACCATGGCATCGGCATTGGGGCACCTTCAAGCGAGCCTGTGAAGAAGAAAAGAGGGAGGCCCCGTAAATATGGTCCTGATGGTGCAGTTTCTTTGAGACTGTCTCCAATGTCTGCCCCTGCAAACTCCACTCAGGATGCAAGTGAAACCACCCCTTCTCAGAAAAAGGCTAGAGGGCGCCCTCCTGGCTCTGGAAGGAAGCAACAGCTAGCTGCTTTAGGTGAATGGATGAATAGTTCAGCAGGGTTGGCCTTTTCACCTCATGTTATCACTATTGGAGTTGGGGAGGACATTGTGGCAAAATTATTGTCATTATCACAGCAGAGACCAAGGGCTCTGTGTATCATGTCGGGCACTGGGACAGTATCTTCAGTCACTCTGCGGCAGCCTGCTTCTACCAATGCCAGTGTAACTTTTGAGGGACGATTCCAAATACTATGCTTGTCTGGTTCTTACTTGGTTGCCGAAGATGGTGGACCCTTGAATAGAACTGGTGGCATTAGTGTTTCACTCTCTAGCCCTGATGGCCATGTTATTGGTGGTGGTGTTGCTGTGCTTATTGCTGGAAGCCCCGTGCAGGTGATGTTGTGCAGTTTTGTTTATGGCGGCTCAAAGACCATGTCTAAACAAGCAACCACTCTCAAAGATGAAAGTTCAGAGCCACCTCCTCAGCATAACGACAAGTTAGCTTCTCCAGCCAGTGCTCCTGCTCCACCTGGTCAAAACTTCCTCCCTCTTTCTGCAGCAAACCTTTGGCCTGGATCCCGACCAGCAGAGCTGAAAAGCGCACACATGCATACTGGCATCGACTTAACTCATGGGTGA 1059 0.5014 MDGREAMAFSDGSAPYYMHRVGVGGSGSGFQPAPGFRPLSNTGIQAESNARGGQGQGGGSVGSNSPFSVEPPQGHANFNHGIGIGAPSSEPVKKKRGRPRKYGPDGAVSLRLSPMSAPANSTQDASETTPSQKKARGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVITIGVGEDIVAKLLSLSQQRPRALCIMSGTGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYLVAEDGGPLNRTGGISVSLSSPDGHVIGGGVAVLIAGSPVQVMLCSFVYGGSKTMSKQATTLKDESSEPPPQHNDKLASPASAPAPPGQNFLPLSAANLWPGSRPAELKSAHMHTGIDLTHG* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1760 352 MobiDBLite consensus disorder prediction 1 147 - -
Gso5g1760 352 Gene3D - 165 294 - -
Gso5g1760 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 278 IPR005175 -
Gso5g1760 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 352 IPR039605 GO:0003680
Gso5g1760 352 MobiDBLite consensus disorder prediction 114 135 - -
Gso5g1760 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 280 - -
Gso5g1760 352 MobiDBLite consensus disorder prediction 288 326 - -
Gso5g1760 352 MobiDBLite consensus disorder prediction 41 72 - -
Gso5g1760 352 CDD DUF296 165 277 IPR005175 -
Gso5g1760 352 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 352 - -
Gso5g1760 352 ProSiteProfiles PPC domain profile profile. 157 298 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1760 Gso-Chr5 40854644 40858330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1760 1 352 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 49.490 1.50e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1760 - - gmx:100798706 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1760 5 40854644 40858330 Gso8g0118 8 1092700 1097129 GST
Gso11g0206 11 1739329 1743794 Gso5g1760 5 40854644 40858330 PCT