Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1748 ATGGCATTCAGCGGGACCCAACAGAAATGCAAGGCTTGCGACAAAACTGTTCACTTTGTCGAAGGTTTATCTGCCGATGGAGCTGCTTATCACAAGAACTGCTTCAGATGCAGCCATTGCAATGGCCTTCTTGCGATAAGCAATTACTCATCCACCGAAGGAGTTTTGTACTGCAAGGTGCACTTTGAGCAGCTTTTCAAGGAAACTGGAACCTACCCCAAGAAATCCCAGTCGTCTGGAAAGCCTCCACTCGAGCTGAATAGAGCACCAAGCAAGCTTTCTGCCTTCTTCTCTGGGACTCAAGAGAAATGTTCAAAATGCAAGAAAACCGTATATCCATTGGAGAAGTTGACCGTGGAAGGCGAGTTTTACCACAAATCATGCTTTAGGTGTGCACATGGAGGATGTTTCCTGACCCCTTCAACCTATGCTGCTCTAGATGGATATCTTTACTGCAAGCCCCACTTCTCTCAGTTGTTCAAGGAGAAGGGTAGCTACAGTTATCTGTCCAAGCAAGCTTCATTGAAGAAAAGTGAAATGCAACAACAAGAACAAGAGGCTGTGGAGAAAGCTACTACAACCGATGATGATCGCTCAGAGTCAGAGCCAGACACGACAACAACAACAAAGGAAGCTGAACAAGCTGATGATGATCACTCTGAGCAAGAGCACTAG 675 0.4607 MAFSGTQQKCKACDKTVHFVEGLSADGAAYHKNCFRCSHCNGLLAISNYSSTEGVLYCKVHFEQLFKETGTYPKKSQSSGKPPLELNRAPSKLSAFFSGTQEKCSKCKKTVYPLEKLTVEGEFYHKSCFRCAHGGCFLTPSTYAALDGYLYCKPHFSQLFKEKGSYSYLSKQASLKKSEMQQQEQEAVEKATTTDDDRSESEPDTTTTTKEAEQADDDHSEQEH* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1748 224 PANTHER OS06G0237300 PROTEIN 1 221 IPR045268 GO:0051015
Gso5g1748 224 MobiDBLite consensus disorder prediction 173 224 - -
Gso5g1748 224 Gene3D Cysteine Rich Protein 97 222 - -
Gso5g1748 224 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gso5g1748 224 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 221 - -
Gso5g1748 224 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Gso5g1748 224 MobiDBLite consensus disorder prediction 189 224 - -
Gso5g1748 224 Gene3D Cysteine Rich Protein 4 74 - -
Gso5g1748 224 MobiDBLite consensus disorder prediction 173 188 - -
Gso5g1748 224 Pfam LIM domain 104 159 IPR001781 -
Gso5g1748 224 Pfam LIM domain 10 65 IPR001781 -
Gso5g1748 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 168 - -
Gso5g1748 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Gso5g1748 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gso5g1748 224 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 74 - -
Gso5g1748 224 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Gso5g1748 224 CDD LIM1_SF3 6 68 - -
Gso5g1748 224 SMART lim_4 9 61 IPR001781 -
Gso5g1748 224 SMART lim_4 103 155 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1748 Gso-Chr5 40774276 40776299 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gso5g1748 LIM 2.6e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1748 - K24413 gmx:100499865 469.929