Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1735 ATGGACTGGAATTTGAAAGCACTTTCTTGGGATTTGAGTGAAGTGGATCAGGCAAACTTACCCAACATGGAAACAATGGAAGGCTCAAGCAGATATGGAATGTATAGAACTAAGGGGGAATTTTCTGTTGACTTGAAGCTTGGCCAGGTGGGGAATTCTGGCACAGAATCAGTGTTGACTAAGTCCAAAGATGCTGTTGGAGTCTCCAAAATGACATCCTCATCTACTTCAGGGTCATCTAAGAGAGCTCGTGCCCTTAGCAACGGGACACAAACAGTGTCATGCCTTGTGGATGGGTGCCACGCTGATCTCAGTAACTGCAGGGACTATCATAGGCGCCATAAGGTCTGTGAAGTCCATTCCAAGACTGCACAGGTCTCAATTGGAGGCCAGAAACAAAGGTTCTGCCAGCAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAGGGGAAAAGGAGCTGCAGGAAGCGGTTAGACGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGAATCTCTAACGCGCTCTGGTAGTTTTTTGTCGAATTACCAAGGCACACAGTTGCTACCTTTCTCAAGTTCACATGAGTACCCATCCACAACTGTGGTGAATCCTACTTGGGGTGGAGTTCTTACAACTTCTGGTGATGTTAGGCTTCATGGGCACAACCAACACCACCACCAGGTGCATTTGGCTGATAAACAGGACCTTTTTCTTGGATCTTCTCCAGCCGGTTTCAAAGAAGGGAAGCAATTGGCATTCATGCAAGGTGACCACACCCTCAACAACCGGAGCCCACATCTTCCAGGTGCTTCCGTGGGCCAGGCCCAGATGTTTCTTAGGACCAGCCTGTATTCAGAAAGCGATGGGCTGAGATGCAAAATGTTCTGTGATAGCCTAACAAGTTCGATCCAAGACAACAACACCTCTCGTGCTCTCTCTCTTCTGTCATCACCACCACAACCGCTCAGTCCTGGAAATGGATTAAACCTGATGGTGAACTCTCACTCGCCCCTTATGCAACCCTTGGGCCTGAGCCTGCATGATAACAGCCTGGGCTCCGTGGACCCTGTTTTGGGCCCCAATGATTCTTCATCAATGTATAACATAGGTTCTAATGGATCTCAGGGGAATGAGGCCCCTCCACTATTTCCCTTTCAATGGGAATAG 1173 0.4876 MDWNLKALSWDLSEVDQANLPNMETMEGSSRYGMYRTKGEFSVDLKLGQVGNSGTESVLTKSKDAVGVSKMTSSSTSGSSKRARALSNGTQTVSCLVDGCHADLSNCRDYHRRHKVCEVHSKTAQVSIGGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLTRSGSFLSNYQGTQLLPFSSSHEYPSTTVVNPTWGGVLTTSGDVRLHGHNQHHHQVHLADKQDLFLGSSPAGFKEGKQLAFMQGDHTLNNRSPHLPGASVGQAQMFLRTSLYSESDGLRCKMFCDSLTSSIQDNNTSRALSLLSSPPQPLSPGNGLNLMVNSHSPLMQPLGLSLHDNSLGSVDPVLGPNDSSSMYNIGSNGSQGNEAPPLFPFQWE* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1735 390 MobiDBLite consensus disorder prediction 159 179 - -
Gso5g1735 390 Pfam SBP domain 95 168 IPR004333 GO:0003677
Gso5g1735 390 SUPERFAMILY SBT domain 93 174 IPR036893 GO:0003677|GO:0005634
Gso5g1735 390 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 390 IPR044817 GO:0003677
Gso5g1735 390 Gene3D - 86 156 IPR036893 GO:0003677|GO:0005634
Gso5g1735 390 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 390 - -
Gso5g1735 390 ProSiteProfiles Zinc finger SBP-type profile. 92 169 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1735 Gso-Chr5 40671273 40675333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1735 1 390 SBP-box Gene Family AT5G50670 40.842 4.34e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso5g1735 SBP 1.9e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1735 5 40671273 40675333 Gso8g0096 8 932625 936126 GST
Gso5g1735 5 40671273 40675333 Gso4g1664 4 46472236 46477070 PCT
Gso5g1735 5 40671273 40675333 Gso6g1422 6 14173138 14178298 PCT
Gso4g1664 4 46472236 46477070 Gso5g1735 5 40671273 40675333 PCT
Gso6g1422 6 14173138 14178298 Gso5g1735 5 40671273 40675333 PCT