Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1722 ATGGAAAAGCTGAATTTTGTTAAAAATGGAGTGAGCAAATTGCCTCCTGGTTTTCGTTTTCAGCCAACAGATGAAGAGCTTGTTTTTCAATACTTGAAATGTAAGGTCTTCTCCTACCCCTTGCCTGCTTCTATCATTCCTGAGATCAATGTCTGCAAGTATGATCCTTGGGATTTGCCAGGGAATTGTGATCCACAAGAGAGGCACTTTTTCAGCCCGAAGGAAGCAAAGTATCGAAATGGTAATCGCATGAACCGAACGACAAAGTGTGGCTATTGGAAGGCAACAGGATCAGACAAAAGAATATCATCTTCAACTTCAACGTGTAATGGTATTGTTGGGGTACGAAAGACATTGATATTTTATGAGGGCAAATCACCAAAAGGCTCCAGAACTCACTGGGTCTTGCACGAATATCGTCTCGTCAGTGTAGAAACTGGTGCTGCCAACTCATCCCATAACTACGTAAACGAGATAGGAGATTGGGTTCTGTGTCGCTTATCGATGAAGAAAAGAAGTGTAGAAAGTGATGGCAGCGGCACTCATCATAAGCATAGACAAAATACAGCAGTTCAAACTACTCGTCCAAGATTAATGTTTGATTTTATGATGGTAGGGAAGACCAATTCTTCTACATCCTCATCATGTTCAAGCTCCAGTAATATCATGGAGGTCTCTTCAAATGCATCGGACCATGAAGAAACAAGTGGCTATGCCCATTTTTAG 726 0.416 MEKLNFVKNGVSKLPPGFRFQPTDEELVFQYLKCKVFSYPLPASIIPEINVCKYDPWDLPGNCDPQERHFFSPKEAKYRNGNRMNRTTKCGYWKATGSDKRISSSTSTCNGIVGVRKTLIFYEGKSPKGSRTHWVLHEYRLVSVETGAANSSHNYVNEIGDWVLCRLSMKKRSVESDGSGTHHKHRQNTAVQTTRPRLMFDFMMVGKTNSSTSSSCSSSSNIMEVSSNASDHEETSGYAHF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1722 241 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Gso5g1722 241 Gene3D NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Gso5g1722 241 MobiDBLite consensus disorder prediction 210 234 - -
Gso5g1722 241 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Gso5g1722 241 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 241 - -
Gso5g1722 241 MobiDBLite consensus disorder prediction 210 241 - -
Gso5g1722 241 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 241 - -
Gso5g1722 241 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1722 Gso-Chr5 40486874 40488749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1722 1 173 NAC Transcription Factor Family AT5G13180 61.272 1.76e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso5g1722 NAM 8.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1722 - - gmx:100812015 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1722 5 40486874 40488749 Gso8g0081 8 766580 768696 GST