Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1720 ATGGGTTGCGCGCTCGGAAAGCCGGCGGACGCCGGTGACCGTCGCCGGCATAGCACTGCGACTACCAGCGGCGGCCATAATCCCGCTAAGGTTCGGGAGAAGCAGAAGCCTCTACACGCCGGCGAACTTTCCGGCGTTATACCGGCACCAGAGCGCCGGAGACCTCGACTTGACTCATTCACTGCGAGCCACCAAGGGTGGCCTCCGTGGCTAATGGCCGTCGCCGGCGACGCCATCCGAGATTGGACTCCTCGTCGTGCCAACACGTTCGAGAAACTTGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAAGCAAAAGACCTTGTGAGTGGGAAGATAGTGGCTTTGAAGAAGGTTAGATTTGATAATGTGGAGGCAGAGAGTGTGAAGTTCATGGCTAGAGAGATTCTTGTTTTGAGGAGGCTTGATCACCCTAATGTTGTGAAGCTTGAGGGGTTGGTTACTTCCAGAATATCATCGAGTCTTTACTTGGTATTTGAGTACATGGAGCATGATCTTGCTGGTCTTTCAGCTGCTGTTGGTGTCAAATTCTCTGAGCCACAGGTCAAATGCTATATGAAGCAATTGCTATCTGGCCTTGAGCATTGCCACAGCAGAGGTGTTTTGCACCGTGATATTAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATACTTAAAATTGCAGATTTTGGACTGGCAACTTTCTTTGATCCTAAGAAAAAGCATCCCATGACTAGTAGAGTCGTGACCCTTTGGTACCGTCCCCCTGAGCTTCTTCTGGGGTCTACCTCCTATGGTGTTGGCGTTGACCTTTGGAGTGCTGGCTGCATTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAGGTTGAGCAGCTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGATGAATACTGGAAGAAATATAGATTGCCAAATGCTACACTCTATAAGCCTCAGCAACCATATAAAAGAAACATTTTAGAAACATTCAAGGATTTTCCATCTTCTTCATTACCTCTGATTGAAACTCTTCTTGCAATAGATCCTGATGATCGTGGCACTACCTCGGCTGCTCTAAATAGTGAATTCTTTACCACTGAGCCCTATGCTTGTGAACCATCTAATTTACCAAAGTATCCTCCCACCAAAGAATTGGATATAAAACTGAGAGATGAAGAAGCAAGAAGGCAGAAAGCTCTAAGTGGAAAAACTAATGCCGTTGATGGTGCCAGAAGGGTTAGAGTACGCGAGCGAGGTTTGGCCATTCCAGGCCCTGAAGCCAATGTAGAGATCCAAAATAACGTAGATAGGTGGAGAGTTGTGACCCATGCAAATGCAAAAAGTAAGAGTGAGAAATTTCCACCTCCTCATCAGGATGGAGCTGTTGGATATCCGCTGGATGATTCAAACAAAAGAGCTGTTTCATTTGGAGCCACTGAAACTTCCTCTGCCTCTACCATATTTGATTCAAAATCTTGGGGATCGGTTACAAGTCATGATGCTGCAAGAGACAAAGGGAGGAAAACTAGTAAAGCAGATTCCCAGATGGCATCATCTTGGAAATTTATGCGTTCATTCAAGCTATCAGCAATTGGCCATTCATTTGATTTATTATTTAGAAGCAATTCAAGCAAATAA 1668 0.4586 MGCALGKPADAGDRRRHSTATTSGGHNPAKVREKQKPLHAGELSGVIPAPERRRPRLDSFTASHQGWPPWLMAVAGDAIRDWTPRRANTFEKLAKIGQGTYSNVYKAKDLVSGKIVALKKVRFDNVEAESVKFMAREILVLRRLDHPNVVKLEGLVTSRISSSLYLVFEYMEHDLAGLSAAVGVKFSEPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPKKKHPMTSRVVTLWYRPPELLLGSTSYGVGVDLWSAGCILAELLAGKPTMPGRTEVEQLHKIFKLCGSPSDEYWKKYRLPNATLYKPQQPYKRNILETFKDFPSSSLPLIETLLAIDPDDRGTTSAALNSEFFTTEPYACEPSNLPKYPPTKELDIKLRDEEARRQKALSGKTNAVDGARRVRVRERGLAIPGPEANVEIQNNVDRWRVVTHANAKSKSEKFPPPHQDGAVGYPLDDSNKRAVSFGATETSSASTIFDSKSWGSVTSHDAARDKGRKTSKADSQMASSWKFMRSFKLSAIGHSFDLLFRSNSSK* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1720 555 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1720 555 PANTHER CELL DIVISION PROTEIN KINASE 61 530 - -
Gso5g1720 555 MobiDBLite consensus disorder prediction 505 527 - -
Gso5g1720 555 Pfam Protein kinase domain 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1720 555 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 61 530 - -
Gso5g1720 555 SMART serkin_6 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1720 555 Gene3D Phosphorylase Kinase; domain 1 76 172 - -
Gso5g1720 555 Gene3D Transferase(Phosphotransferase) domain 1 173 414 - -
Gso5g1720 555 MobiDBLite consensus disorder prediction 1 43 - -
Gso5g1720 555 CDD STKc_CDK9_like 90 374 - -
Gso5g1720 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Gso5g1720 555 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Gso5g1720 555 SUPERFAMILY Protein kinase-like (PK-like) 83 379 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1720 Gso-Chr5 40464036 40468142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1720 82 408 Core Cell Cycle Gene Families AT5G10270 48.688 8.75e-113 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso5g1720 Pkinase 2.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1720 K08819 - gmx:100789359 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1720 5 40464036 40468142 Gso8g0079 8 749117 753095 GST