Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1719 ATGGATGATGGCCGCCAACACGAAAATGGCAGGCATAAGATGGAATACTATAGAGGAGCACATTCCCTGTGGAATACTGATTCCCAGCATCAAGTAAAAGAGCCGAATGCACTAGTTATGAATAAGAAGATTAGGTCCATTATGGCTGAAAGGCAGGCTGCCATTCTAGAAATTGAACTAGAGGCTGCTATATCTGAAAAGAATGAAGCCTTGGCTGCTCGAGATGCAGCCATTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCCCTTTTGGAACGAGATAATGCCCTCGCTGCCCTTCAGAGTCGGAATAATTCTGTCAACTTCCCATTTGGCGGTGGAATTCAATGTGGATCGAAACGGATGCACCATTCTTCTAACCATCTATCTAACATGACTGAAGCTGCATACAACACAAAGGATATGATAATAAGAGATGCCTCCCCAGTGACTGTTATACCTTCTGAAGCTGTCAATTCTCATCAATCAAAGAGATCAAAGGAGAACAAGGTAATTAATTCTAAGGCATCAAAGCCACCCTGCAAAGTAAAGAAAATGGGAGAGGATTTAAATAGGCAGGCTTCTTCTGAAGGGACAAAGATCAGATCTGAATGGGATAGGCAGGATGTTGGCGTGAATCTGGTTGCATTTGATGAAACTATCATGCTGGTCCCAGTTTGCACATGTACTGGTGTACCACGACAGTGCTACAAATGGGGGAATGGCGGATGGCAGTCATCTTGTTGTACCACAACATTGTCTATGTATCCGCTACCACAGCTTCCAAACAAGCGCCATGCCCGGATTGGAGGACGAAAGATGAGCGGAAGTGTCTTTACAAGACTTCTCAGTAGGTTGGTGTCTGAAGGCCATGATTTATCTATACCATTGGATCTCAAGGAATACTGGGCAAGACATGGAACAAACCGCTACATCACTATCAAGTAA 954 0.4455 MDDGRQHENGRHKMEYYRGAHSLWNTDSQHQVKEPNALVMNKKIRSIMAERQAAILEIELEAAISEKNEALAARDAAIRQRDEALAQRDNALLERDNALAALQSRNNSVNFPFGGGIQCGSKRMHHSSNHLSNMTEAAYNTKDMIIRDASPVTVIPSEAVNSHQSKRSKENKVINSKASKPPCKVKKMGEDLNRQASSEGTKIRSEWDRQDVGVNLVAFDETIMLVPVCTCTGVPRQCYKWGNGGWQSSCCTTTLSMYPLPQLPNKRHARIGGRKMSGSVFTRLLSRLVSEGHDLSIPLDLKEYWARHGTNRYITIK* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1719 317 Coils Coil 53 73 - -
Gso5g1719 317 MobiDBLite consensus disorder prediction 160 185 - -
Gso5g1719 317 SMART GAGA_bind_2 1 317 IPR010409 -
Gso5g1719 317 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 317 - -
Gso5g1719 317 Pfam GAGA binding protein-like family 1 317 IPR010409 -
Gso5g1719 317 PANTHER - 1 317 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1719 Gso-Chr5 40455812 40459839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1719 1 317 BBR or BPC Transcription factor family AT2G21240 57.680 1.68e-126 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Gso5g1719 GAGA_bind 2.6e-98 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1719 - - gmx:100813103 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1719 5 40455812 40459839 Gso8g0078 8 742920 747043 GST