Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1717 ATGGCAGCTTTTTCATCCCAATACTACCATTCCTTTGTGGTTGACTCCGCATGCTTCTCAATTACTCCTCCCATTATAAACACTTCTAGTAACTTTCTTCCTTCTCCTCATTATCTTCACAATAATAATATTCAGGAAACGTCTTATAGTGTCACTGATAATAAGGAAACAAGCTGTTTTGAACAAAGCTCCAAGGTTACCATCAGTGACATTGAACTTTCTGTGGTAAAAAACCATAGTCCTGAGACTTCCATGGTAGTGGACAAGCTTGAAAAAGGTGAACAGGTCACTCAGAAGGTGGTGACCCGCATGGAGAAGAAGAGAAGAGCAAGAAATGGATCTTCCTCGAGTGACCCTTTATCAAAGGAGTCAACAGAAGGGGGAAAGAAGAAACAAAAGAAGCCAAAAGAAGTGACGAAGGACAAGAAAATAGGTGCTGAAGATCCTCCAACTGGGTATATCCACGTTAGAGCAAGAAGGGGTCAAGCAACCGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTAAAAGGATGACGACGTTGCAGCGACTTGTGCCAGGCTGTGATAAGGTAACCGGAAAGGCCCTTGTGTTGGACGAAATAATCAATTATGTTCAGTCCTTACAGAATCAAGTGGAGTTCTTGTCAATGAAACTTGCATCCGTGAATCCCATGTTCTTTGACTCGGCCATGGACTTAGACACCCTCATGGTTAGACCCGATCAGAAATTGAGTAATATAGCATCACCATCACCACTACCATGTGTAGCACAATTCAGACCCCACCAGGCCATTGCTTTTGCTGACACAATTACCACCCCGACCACCACTACCAATAGCTTCCCCACAGCTAATAATGATGGCTATCTTTTGGATTATTCATCCTCACTTTTTCTTCAAGGCCATAGACCAAATATCTTTGAGGATAACGGTGGTCAGTTTTGGGACGTAGAAGACCAACGACAAAAGTTTCTTCATCCATATAGATTCGGCAATAATTCGGGTTCTTTCAATTGA 1029 0.4266 MAAFSSQYYHSFVVDSACFSITPPIINTSSNFLPSPHYLHNNNIQETSYSVTDNKETSCFEQSSKVTISDIELSVVKNHSPETSMVVDKLEKGEQVTQKVVTRMEKKRRARNGSSSSDPLSKESTEGGKKKQKKPKEVTKDKKIGAEDPPTGYIHVRARRGQATDSHSLAERVRREKISKRMTTLQRLVPGCDKVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPMFFDSAMDLDTLMVRPDQKLSNIASPSPLPCVAQFRPHQAIAFADTITTPTTTTNSFPTANNDGYLLDYSSSLFLQGHRPNIFEDNGGQFWDVEDQRQKFLHPYRFGNNSGSFN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1717 342 MobiDBLite consensus disorder prediction 93 113 - -
Gso5g1717 342 MobiDBLite consensus disorder prediction 123 148 - -
Gso5g1717 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983
Gso5g1717 342 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Gso5g1717 342 SMART finulus 168 218 IPR011598 GO:0046983
Gso5g1717 342 CDD bHLH_AtBPE_like 152 237 - -
Gso5g1717 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Gso5g1717 342 MobiDBLite consensus disorder prediction 93 152 - -
Gso5g1717 342 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 342 IPR024097 GO:0006355
Gso5g1717 342 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 342 - -
Gso5g1717 342 Gene3D - 159 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1717 Gso-Chr5 40435522 40438972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1717 106 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 64.493 2.16e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g1717 HLH 7.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1717 - - gmx:100790417 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1717 5 40435522 40438972 Gso8g0076 8 718298 721244 GST