Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1710 ATGATGTCTGGTTGGATGCAAGACACAGCAGAAGAACAAAACTCTGCTTCTGCTTCATGGCCAAACTCAAACGCCAACAACGAATTAAGCTGCGTGTCATTGTGTGCTTACAAACCGATCTCCTCCCAGATCCATGAAGCAGAATGGCGGCACGTGCCCAACAACATAACACATACCAACGTTGCTGCTTCTGATAATTATAATCTGCTTCAACAACCATTGCACCCTACTAACCTCAACTTTCTCACTCCCAAGCCCACCTTTTACCCTTTGGAGATGAGTTCCGATGTGGGATTTCTTGACCCTCAAGCTTCCTTCACTTCGAAAACTGATGGTGATGTCTTCTTGAGCTCAAATAATAACCTTTTAACCCTTCCAAATATGAGCTCAAGCATGTGTGTGGTGTCCCCCCAACCCCAACAACAAGGAAGTGTTGTTGGATTTTCGGGTTTCAAGAATATTATGGGCTCTGATCATGATCACGTGGTGGAGGGTTCTAGAAAGGCCTTGCTTCTGAGCTGCAGGTCCAGCATACTCAGACCCCTTGAATCGTTGCCCCCATCAGGTTCACAGCCAACACTTTTTCAAAAGAGAGCAGCACTTAGGAAAAACTTGGCCGTGGCTGATGATAACTGCAAAGGCAAGAAGAGTGAAGTACTCATTGATAGTAAGAAGAGGGGAACGTGTAATAATGTTGGAGAAGGTGTTGAAGGTGGGAGTTTTGATGGGTCGGGGTTGAATAATTATGATTCTGATGAGATCAGTGATGACAACAATAAGATGGAAGAGATTAGTGCAAGGAACGGTGGAAACAGCTCAAAAGCCAATAGCACCGTCACCGGCAGCGGCGTGGATCAAAAGGGCAAGAAGAAGACAGGAATACCTGCAAAGAATTTGATGGCTGAACGCCGTCGAAGGAAGAAACTCAATGATAGACTCTACATGCTGAGATCCGTTGTTCCCAATATTAGCAAAATGGACAGGGCTTCAATCCTTGGGGATGCAATCGAGTATTTGAAGGAACTTCTGCAAAGGATCAGTGAGCTTCACAATGAATTGGAGTCAACACCAGCAGGTGGCTCTTCAAGCTTTCTTCATCATCCTTTGACACCCACTACTCTACCAGCCCGTATGCAAGAAGAACTTTGTCTCAGCTCGTTGCCAAGCCCTAATGGCCATCCTGCTAATGCTAGGGTTGAGGTTGGGTTGCGCGAAGGAAGAGGTGTAAACATCCACATGTTTTGCGACCGGAAACCCGGACTCTTGCTCTCTACCATGACGGCTCTCGACAACCTTGGACTAGACATTCAGCAGGCAGTTATCAGCTATGTCAATGGATTTGCTATGGATATTTTCAGAGCTGAGCAACGCAACGAAGGTCAGGATGTCCATCCGGAACAAATCAAAGCGGTTTTGTTGGATTCAGCTGCTGGCTTCCATAGCATGTCCTAA 1452 0.4628 MMSGWMQDTAEEQNSASASWPNSNANNELSCVSLCAYKPISSQIHEAEWRHVPNNITHTNVAASDNYNLLQQPLHPTNLNFLTPKPTFYPLEMSSDVGFLDPQASFTSKTDGDVFLSSNNNLLTLPNMSSSMCVVSPQPQQQGSVVGFSGFKNIMGSDHDHVVEGSRKALLLSCRSSILRPLESLPPSGSQPTLFQKRAALRKNLAVADDNCKGKKSEVLIDSKKRGTCNNVGEGVEGGSFDGSGLNNYDSDEISDDNNKMEEISARNGGNSSKANSTVTGSGVDQKGKKKTGIPAKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRASILGDAIEYLKELLQRISELHNELESTPAGGSSSFLHHPLTPTTLPARMQEELCLSSLPSPNGHPANARVEVGLREGRGVNIHMFCDRKPGLLLSTMTALDNLGLDIQQAVISYVNGFAMDIFRAEQRNEGQDVHPEQIKAVLLDSAAGFHSMS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1710 483 MobiDBLite consensus disorder prediction 236 291 - -
Gso5g1710 483 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Gso5g1710 483 Gene3D - 285 357 IPR036638 GO:0046983
Gso5g1710 483 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 61 482 - -
Gso5g1710 483 Pfam Helix-loop-helix DNA-binding domain 300 342 IPR011598 GO:0046983
Gso5g1710 483 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 362 IPR036638 GO:0046983
Gso5g1710 483 SMART finulus 299 348 IPR011598 GO:0046983
Gso5g1710 483 MobiDBLite consensus disorder prediction 264 285 - -
Gso5g1710 483 MobiDBLite consensus disorder prediction 1 22 - -
Gso5g1710 483 CDD bHLH_AtAMS_like 296 363 - -
Gso5g1710 483 Coils Coil 336 356 - -
Gso5g1710 483 PANTHER BHLH TRANSCRIPTIONAL FACTOR 61 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1710 Gso-Chr5 40372875 40377372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1710 91 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 49.330 3.30e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g1710 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1710 - - gmx:100217334 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1710 5 40372875 40377372 Gso4g1691 4 46906740 46910862 PCT
Gso5g1710 5 40372875 40377372 Gso6g1395 6 13749680 13753953 PCT
Gso4g1691 4 46906740 46910862 Gso5g1710 5 40372875 40377372 PCT
Gso6g1395 6 13749680 13753953 Gso5g1710 5 40372875 40377372 PCT