Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1709 ATGGCGACGTCGGAGGTATCCATCAAGGGAAATTCGGTGAACGGAAAAGGAGATAATAGTTCTGGTGGCTACACCAACGATGTTAGGAACGGTTCTGGTGGAGGCGAGGCTCGGAATTCTTCTTCTTCGTCTTCATCCGCGAGAGACGCGGAAGCTGCGCTTTACAGGGAGCTGTGGCACGCGTGTGCAGGTCCTCTGGTGACGGTGCCCAGAGAAGGAGAGCGCGTGTTCTACTTTCCTCAAGGACACATCGAGCAGGTTGAAGCGTCCACAAATCAGGTAGCGGAACAGCATATGCCGGTTTACGATCTACCACCCAAGATCCTTTGTCGGGTTATCAACGTCATGCTCAAGGCGGAGCCAGACACGGATGAGGTGTTTGCTCAAGTGACTTTACTTCCTGAGCCAAATCAAGATGAGAATGCGGTGGAGAAAGAGGGTCCTCCGGCGGCGCCTCCTCGGTTTCACGTGCATTCGTTTTGTAAAACGCTGACGGCGTCTGATACGAGCACTCACGGTGGGTTTTCGGTGCTGAGGCGACATGCCGATGAATGCCTCCCTCCGCTGGACATGACGAAGCAGCCACCTACCCAGGAGTTGGTGGCCAAGGATCTGCACGGGAACGAGTGGCGATTCAGGCATATTTTTCGGGGTCAACCGCGTAGACACTTGCTGCAAAGTGGTTGGAGTGTTTTTGTTAGCTCCAAGAGGCTAGTTGCTGGGGATGCGTTTATATTTTTAAGGGGTGAGAATGGGGAACTTCGAGTTGGTGTTAGGCGTGCAATGAGACAACAGGGTAATGTTCCATCATCGGTTATCTCAAGCCACAGTATGCATCTCGGTGTTCTTGCAACTGCTTGGCATGCCATATTGACTGGGACCATGTTCACTGTGTATTACAAGCCTAGGACTAGTCCAGCAGAGTTTATTGTTCCCTATGATCAATACATGGAGTCTCTCAAAAATAATTATACCATTGGCATGCGGTTCAAAATGAGGTTCGAAGGTGAAGAGGCTCCGGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGATACCAAAAGGTGGCCAAAGTCCAAATGGAGAAGTCTTAAGGTTAGATGGGATGAAACATCAAACATACCACGTCCTGAGAGAGTTTCACAATGGAAGATAGAGCCTGCTCTTGCACCTCCTGCTCTGAATCCTCTACCAATGCCCAGGCCTAAAAGGCCTCGATCTAATGTGGTTCCATCATCCCCGGATTCCTCTGTTCTTACTCGTGAAGCTTCATCTAAAGTCAGCGTAGATCCTTTGCCAACAAGTGGGTTTCAAAGGGTCTTGCAAGGTCAAGAACTGTCGACCTTGAGAGGTAATTTTGCTGAAAGCAACGAATCTGATACGGTCGAGAAGTCTGCTGTGTGGCCACCTGTTGCAGATGATGAAAAGATTGATGTTTCTACCTCAAGAAGGTATGGGTCAGACAGCTGGATGTCAATGGGAAGGCATGAACTAACATATCCAGATCTGCTTTCAGGCTTTGGGACCCATGGAGATCATTCATCCCATCCATCCTTTGTTGATCAAAATGGTCCTGTAGCTAATGTTGGTAGAAAACATTTGTTGGATTGTGAAGGCAAACATAATGTTCTGAGTCCTTGGTCTGGAGTGCCATCTAGCCTGTCACTGAATCTTTTGGACTCAAATACAAAAGGCTCTGCTCAAGGTGGTGATACAACTTACCAAGTTCGAGGGAATTTGAGGTATAGTAGTGCATTTGGTGAGTACCCCATGCTTCATGGACATAAAGTTGAGCATTCACATGGAAACTTTTTGATGCCACCACCACCATCAACTCCATATGAGAGTCCTCGTTCAAGAGAACTGTTGCCCAAACCAATATCAGGGAAACCTTGTGAGGTTTCAAAACCGAAAGACAGTGACTGTAAGCTATTTGGCATCTCACTTCTTAGTAGCCCCATTGCACCAGAGCCTTCTGTATCACAAAGAAATGTCCCAAGTGAGCCAGTTGGTCACATGCATACAACATCACACCAACAGCGTGCATTTGACAACGATCAGAAGTCTGAGCATTCAAGGGGGGGATCAAAACCAGCTGATGGTCTGCTGATTGACGACCATGAAAAGGTGTTACAAACTTCTCAGACACATCTGAAAGATATTCAAGCAAAATCTCATAGTGGTTCTGCTAGAAGTTGCACTAAAGTTCACAAGAAGGGGATTGCGCTCGGTAGGTCAGTGGACCTCACAAAATTCAGTGATTATGGGGAATTAATTGCTGAATTAGATCAACTATTCGAATTTGGAGGTTTATTAACTTCTCCACAAAAGGATTGGCTTATTGTCTACACTGATAATGAGGGAGATATGATGCTTGTTGGTGATGATCCGTGGCAGGAATTTGTTGCAATGGTTCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCCCGGGTACCTTGAGTTCAAAGAATGAAGAGAATCAATCTGCTAGTGAAGGTGCCACAGACACACAAGAAATCAAGTGTCAGCTCAATAATTCAGCTTCAGATACCTGA 2577 0.466 MATSEVSIKGNSVNGKGDNSSGGYTNDVRNGSGGGEARNSSSSSSSARDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAEQHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEGPPAAPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWPKSKWRSLKVRWDETSNIPRPERVSQWKIEPALAPPALNPLPMPRPKRPRSNVVPSSPDSSVLTREASSKVSVDPLPTSGFQRVLQGQELSTLRGNFAESNESDTVEKSAVWPPVADDEKIDVSTSRRYGSDSWMSMGRHELTYPDLLSGFGTHGDHSSHPSFVDQNGPVANVGRKHLLDCEGKHNVLSPWSGVPSSLSLNLLDSNTKGSAQGGDTTYQVRGNLRYSSAFGEYPMLHGHKVEHSHGNFLMPPPPSTPYESPRSRELLPKPISGKPCEVSKPKDSDCKLFGISLLSSPIAPEPSVSQRNVPSEPVGHMHTTSHQQRAFDNDQKSEHSRGGSKPADGLLIDDHEKVLQTSQTHLKDIQAKSHSGSARSCTKVHKKGIALGRSVDLTKFSDYGELIAELDQLFEFGGLLTSPQKDWLIVYTDNEGDMMLVGDDPWQEFVAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGATDTQEIKCQLNNSASDT* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1709 858 Gene3D - 157 262 IPR015300 -
Gso5g1709 858 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 40 841 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso5g1709 858 MobiDBLite consensus disorder prediction 394 410 - -
Gso5g1709 858 Gene3D - 323 393 - -
Gso5g1709 858 SUPERFAMILY DNA-binding pseudobarrel domain 156 289 IPR015300 -
Gso5g1709 858 MobiDBLite consensus disorder prediction 412 434 - -
Gso5g1709 858 MobiDBLite consensus disorder prediction 682 704 - -
Gso5g1709 858 SUPERFAMILY CAD & PB1 domains 736 811 - -
Gso5g1709 858 Pfam AUX/IAA family 722 822 IPR033389 -
Gso5g1709 858 Gene3D - 730 823 - -
Gso5g1709 858 ProSiteProfiles B3 DNA-binding domain profile. 160 262 IPR003340 GO:0003677
Gso5g1709 858 CDD B3_DNA 158 260 IPR003340 GO:0003677
Gso5g1709 858 MobiDBLite consensus disorder prediction 603 638 - -
Gso5g1709 858 MobiDBLite consensus disorder prediction 1 45 - -
Gso5g1709 858 MobiDBLite consensus disorder prediction 657 681 - -
Gso5g1709 858 MobiDBLite consensus disorder prediction 656 704 - -
Gso5g1709 858 ProSiteProfiles PB1 domain profile. 734 816 IPR000270 GO:0005515
Gso5g1709 858 SMART B3_2 160 262 IPR003340 GO:0003677
Gso5g1709 858 MobiDBLite consensus disorder prediction 393 434 - -
Gso5g1709 858 PANTHER AUXIN RESPONSE FACTOR 2 40 841 - -
Gso5g1709 858 Pfam Auxin response factor 286 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso5g1709 858 MobiDBLite consensus disorder prediction 822 858 - -
Gso5g1709 858 Pfam B3 DNA binding domain 160 261 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1709 Gso-Chr5 40367291 40372082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1709 1 856 B3 DNA Binding Superfamily AT5G62000 64.310 0.0 1081
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso5g1709 B3 2.7e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1709 5 40367291 40372082 Gso8g0068 8 654367 659176 GST
Gso5g1709 5 40367291 40372082 Gso4g1692 4 46911414 46916318 PCT
Gso5g1709 5 40367291 40372082 Gso6g1394 6 13744254 13749147 PCT