Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1708 ATGCGTTTCACGAATCTCGATGACACTCCAATGTTCCGCCAACAGCTCCTGTGTTTGGAGGAAAATACTGAATCCTTGCGCGCGAGATGCTGCAAGTTCTACAAAGGATGTCGAAAGTATATGGAAGGTCTTCGAGAGTCATATAATGGGGACATTGCATTTGCAAGTGCCATAGAAAATTTTGGAGGAGGGCACAATGATCCTCATTTTGTTTCTTTGGGAGGACCTGTTATGGCCAAATTTACTATAGCGTTGAGAGAAATCAGTACTTACAAGGAACGGCTCCGGTTTCAAGTAGAGCACATTTTCAATGACCAGTTACTACCCATTGTCGATGTTGACATCCATGAAGTCAAGGAAGCTCGTAAGCGTTTTGATAAAGCTTCCCTTGTATATGACCAGGCACGTGAAAAGTTTATGTCACTGAAAAAAAGCACTAAGATTGACATTGCCACTGTCATAGAAGAGGAGTTGCAGGATGCAAGAGCATCATTTGAGGAAGCCCGTTTCAATCTGGTTGGCACTCTTAATAACATTGAGTTCAAGAAGAGATTTGAGGTTTTAAAGGCTGTAACTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGGTATCAGCTATTACATCAGTTGGAACCTTTAATTAGTGAGATTATGGATTATGTAAAACAGTCAAAAGAAAGTTACAATCAGGAGCAGATTTCACTTTATGAAAGAATGCAAGACTACAAAAAACAAGTTTATGAAGAAAGTAGGTTGTCCTTGAATGGTCCTTATGGTTCTCCTAGTAGAGACTCTGCACCTCCGTTTTCTAGGATATCAAATGAAGTGGCAGATGTAGTGATGGAATCCGCTGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCTAAACGATCCTCCAATTTGAGAGGTGACTGGAAAAGAAGGTATTTTGTTGTTGACAGTCGAGGAATGTTGTACTACTATCGCAATCCATATGGCAGCAATCAACCATCTCCAAAGAGGAATAGTGGCACTGAAAATGGTTCTGGGCTTCTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGATCTGTAGCACGTCATACAGTAAGCCTGCTGACATCAACAATCAAGGTTGATGCTGACCAGTCGGATTTAAGATTCTGCTTCAGGATTATTTCGCCATCGAAGAACTATACGTTGCAGGCAGAAAATGCAGTGGATCAGATGGATTGGATGGAAAAGATAAATGGAGTAATTGCCTCCTTATTGAGTGTCCAGACACTGGGAATGCCTCTCTCAGCTGACTCAGAAAACGGCGACTCTTACTCTGATGACAATATTGATAAGTTAGAAAGCTCTCCAGATGATGATCACACTGTGACTGTGAAGTCTGCATCCAAGAATCCCACCCCTAAAAACCAGTTTCGTTCATCTAGAAGTTTGCAGTTGCATAAACACAGTATGAGAATTGAAAAACCAATTGATGTTCTTAGGAGGGTGAGTGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGAATGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAGTGTTCTGGTGTTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTTAAAGTGTGGGATCCCTCTGTTTTAAGTATGCTTAAGTCACTGGGCAATCTTTTTGCAAACTCAGTTTGGGAGGAGCTGCTGTATCCACCGAGTAATTTGCAAACTGTTGACACCCCTGCGAGTTCATCCAAGGAAAATGGAGAGGAGTTCTTTCATGCAAGAAAACCAAAACATGACGATTCTATTTCATTAAAGGAAAGGTTCATTCATGCAAAGTATTCTGAGAAAATATTTATTCCCCGGACAAAGAAATATCACCCTCTCTTTTCACCCGCACAACTGGTGCTGGAAAGCATCTATGCCAATGATAAGAAAGCAGTCTACCAGCATATTATCAAGTCAGATTTTGACATCAATGCCATCGGTTGGCAAGCATCGTCTGATGACTCTTTCAACATGGTTTCTTCAAATAATTTAAACATTGCCTCTCAAAGTGAAATTCAGCCCATTGAGGCCATACAAGATGGTTCTAGCGTGCTTCACCTTGCATGCCTAACTAGTGACATTGGCATGGTGGAGCTGCTCCTACAACATGGGGCAAATATAAATGCTTGTGATTCTAGAGGTCAGACACCACTACATTATTGTATTATTAAAGGGAAGACCGCAGCTGCAAAAGTGCTTATCATGAGGGGAGCCAATACATATGTCGCAGATAAAGAAGGCAAAACTCCTGTTAAGCTTGCATCAGAATCTGGCTGTGGTGATGATGAAATTCTCGCTCTCTTGACAAGCAGATGA 2403 0.4128 MRFTNLDDTPMFRQQLLCLEENTESLRARCCKFYKGCRKYMEGLRESYNGDIAFASAIENFGGGHNDPHFVSLGGPVMAKFTIALREISTYKERLRFQVEHIFNDQLLPIVDVDIHEVKEARKRFDKASLVYDQAREKFMSLKKSTKIDIATVIEEELQDARASFEEARFNLVGTLNNIEFKKRFEVLKAVTGIMDAHLRYFQQGYQLLHQLEPLISEIMDYVKQSKESYNQEQISLYERMQDYKKQVYEESRLSLNGPYGSPSRDSAPPFSRISNEVADVVMESAANGKVQIIRQGYLSKRSSNLRGDWKRRYFVVDSRGMLYYYRNPYGSNQPSPKRNSGTENGSGLLSRWLSSHYHGGVHDERSVARHTVSLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGMPLSADSENGDSYSDDNIDKLESSPDDDHTVTVKSASKNPTPKNQFRSSRSLQLHKHSMRIEKPIDVLRRVSGNDKCADCGKPEPEWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDPSVLSMLKSLGNLFANSVWEELLYPPSNLQTVDTPASSSKENGEEFFHARKPKHDDSISLKERFIHAKYSEKIFIPRTKKYHPLFSPAQLVLESIYANDKKAVYQHIIKSDFDINAIGWQASSDDSFNMVSSNNLNIASQSEIQPIEAIQDGSSVLHLACLTSDIGMVELLLQHGANINACDSRGQTPLHYCIIKGKTAAAKVLIMRGANTYVADKEGKTPVKLASESGCGDDEILALLTSR* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1708 800 ProSiteProfiles Ankyrin repeat profile. 709 741 IPR002110 GO:0005515
Gso5g1708 800 Gene3D - 285 432 IPR011993 -
Gso5g1708 800 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 800 - -
Gso5g1708 800 CDD BAR_SFC_plant 15 215 IPR035670 -
Gso5g1708 800 CDD PH_ACAP 295 428 - -
Gso5g1708 800 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Gso5g1708 800 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Gso5g1708 800 SMART arf_gap_3 495 640 IPR001164 GO:0005096
Gso5g1708 800 MobiDBLite consensus disorder prediction 467 484 - -
Gso5g1708 800 Pfam BAR domain of APPL family 6 233 - -
Gso5g1708 800 MobiDBLite consensus disorder prediction 438 484 - -
Gso5g1708 800 SMART ANK_2a 709 738 IPR002110 GO:0005515
Gso5g1708 800 SMART ANK_2a 742 771 IPR002110 GO:0005515
Gso5g1708 800 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Gso5g1708 800 Pfam PH domain 294 423 IPR001849 -
Gso5g1708 800 Gene3D Arf GTPase activating protein 476 640 IPR038508 -
Gso5g1708 800 ProSiteProfiles ARF GTPase-activating proteins domain profile. 495 640 IPR001164 GO:0005096
Gso5g1708 800 Pfam Ankyrin repeats (many copies) 711 763 IPR002110 GO:0005515
Gso5g1708 800 CDD ArfGap 498 627 - -
Gso5g1708 800 Gene3D - 652 800 IPR036770 -
Gso5g1708 800 PANTHER CENTAURIN/ARF 1 800 IPR045258 GO:0005096
Gso5g1708 800 Coils Coil 118 138 - -
Gso5g1708 800 ProSiteProfiles Ankyrin repeat profile. 742 774 IPR002110 GO:0005515
Gso5g1708 800 SUPERFAMILY ArfGap/RecO-like zinc finger 494 634 IPR037278 -
Gso5g1708 800 ProSiteProfiles PH domain profile. 292 424 IPR001849 -
Gso5g1708 800 ProSiteProfiles Ankyrin repeat region circular profile. 742 774 - -
Gso5g1708 800 PRINTS HIV Rev interacting protein signature 507 526 IPR001164 GO:0005096
Gso5g1708 800 PRINTS HIV Rev interacting protein signature 526 543 IPR001164 GO:0005096
Gso5g1708 800 PRINTS HIV Rev interacting protein signature 549 570 IPR001164 GO:0005096
Gso5g1708 800 Pfam Putative GTPase activating protein for Arf 498 633 IPR001164 GO:0005096
Gso5g1708 800 MobiDBLite consensus disorder prediction 446 466 - -
Gso5g1708 800 ProSiteProfiles Ankyrin repeat region circular profile. 709 740 - -
Gso5g1708 800 SMART PH_update 293 426 IPR001849 -
Gso5g1708 800 SUPERFAMILY PH domain-like 203 423 - -
Gso5g1708 800 SUPERFAMILY Ankyrin repeat 659 788 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1708 Gso-Chr5 40333046 40347039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1708 496 633 C2H2 Transcription Factor Family AT4G21160 41.379 6.89e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1708 K12489 - gmx:100792517 1601.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1708 5 40333046 40347039 Gso8g0067 8 632053 634666 GST
Gso5g1708 5 40333046 40347039 Gso4g1694 4 46948340 46954717 PCT
Gso4g1694 4 46948340 46954717 Gso5g1708 5 40333046 40347039 PCT