LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso5g1704	ATGCCTTTTCAAATCATGGATCAGAGGGGGGTTTCTGCTTCATCCCACTTTTTTGATGACATTTCCTTTCGCTCTGAGAGGAATGTTGGATTGCAGAAACCAAAATCTATTAATGACCATTACCCACAAGGAAACAATGGAATGGTAGCATCACCTGGCAGCATTTTGAATGCTACACCACCCCTTGATGTAAATGCAAAAGTTGGCTTACTGGTGCCACAGGCTAGTCTACCTGAGGATAGTATACATTCCACGGAATCATCGAATTGCCGTCCCAAATCATTGTCTGATGCATGTCTGCAGTCAGCACCTACCTCTTATGGTTTAATTGGGAACAAGATTGTGACCAATGCTGCCCCTTGTGAAAGTAGTTTATTCTCAAGCTCCATGTCTGAGATATTTAGCCAAAAGTTAAGGTTATTCGGGAATGATGTTCGGTCTGATCATCTCATTAATGCTGATTCCCCTCCTGAGGAAGAACCATATAAATCTCTTGAAGAAATGGAGGCTGACACTATAGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTGTTGATGAGTTAGGATGCAGTTCTCATGCCAGAACAAATGATGATTTTGAAGATTTTGATCTGTTTAGCAGTGGGGGAGGCATGGAGATGGAAGGAGATGAACATTTAAGTTCAGGAAAAAGAATAAGTGCTCTCGATGGAGATTTTGGTTTCTTTGGAGGTTATAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGACGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTATACAGCCAGTAAGCATCGTGGGTTTGTCATGATTTCTTATCAAGATCTAAGGGCAGCACAAAATGCAATGCAAGAACTTCAAAATAGGCCATTGAGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGGTCAATGCTCCAGAAAAGGATATTGGCCATGGTACACTGATGCTATCTGGTCTTGATTCACCTGTTTTAGATGACGAGCTTAAACAAATTTTTGGATTTTATGGAGAAATTAAAGAAATCTATGAATATCCAGAAATGAATAATCACAAATTTATAGAGTTTTATGATGTCCGAGCTGCGGAGGCTGCTCTTCGTGCATTGAACAAGATTGACATTTCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGTTTGATGCACCAGTCTCGGAAGGGGCAAGAGGAGCGAGATCTTGGTCAAAGTATTATAGACAACTTATCATCAAGACAAAAAGTGCCTTCTGGAGTAATTGGATCTGGTTGCTTTGAAAATGGATATAATCAGAGATTTCAATCTACAGTTAGGCAACCGCTGAATGCATTTATGGATAATGCATTCATTCATGTGAATTCTGGTATTCACAACACTGTGAGAGGGGCACCTGCTGGAAAAGTGTCCAGTGTTTGTGAGTCAAGTAGCTTTATTGATGCAATGAACTTTGCATCTGGTTCGAGATTTCATCCTCATTCCTTACCTGAGTATCGTGATAGTTTAGCTAATGGTAGTCCATATAACTTTTCTAGCTCCATTAGCAACATGGCTAACAATATAGGTGCTGGAGCAACAGAAGCCTCTGATGGCAGGCATATTCAGGGAATGGGCTCAACTGGGAACTTGGCAGAATTTAATGCAGGAGGAAATGGGATACGCCCACATCATGGACTTTATCATATGTGGAACAGCTCCAATTTGCAACAGCAAACTTCATCAAGTACCATGCTTTGGCAGAAATCACCATCATTTGTTAATGATGCTTCTTCTCCGGGCCTTCCACAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGAACACCACATATGATGGACCATCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCATGGGAAAGGAAAAATTCTTACTTGGGAGGGTCCCCTGAGGCTTCTGGTTTTCGCTTGGGTTCTCTAGGAAGTGGAGGTTTTCATGGTTCCTGGCAAATGCATCCACTGGATTTTCCTTCTCATAACATGTTTTCTCATGTTGGTGGGAATGGCACCGAACTAACATCCAATGCTGGACAGAACTCTCCTAAGCAGTTATCTCATGTTTTCCCTGTGAGACATCCTATGTCTTCAATGTCAAAATTTGATGCTTCCAATGAACGTATGAGAAACCTTTATCACCGTAGAAATGAAGCAAACACCAACAATGTTGATAAAAAACTGTATGAGCTTGATTTAGGTCGCATATTGCGTGGGGAAGACAGCCGAACTACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCAATAGACGAGCAATGTAAGGGAACTTATGATTTTCTGTATTTACCGATTGATTTCAAGAATAAATGTAATGTTGGCTATGCATTCATAAACATGATTGATCCTGGTCAAATTATTCCTTTCCACCAGGCTTTTGATGGGAAAAAATGGGAGAAGTTTAATAGTGAAAAAGTAGCCTCACTTGCCTATGCCCGAATTCAAGGAAAAGCTTCTCTTATTGCTCATTTTCAGAACTCAAGCCTGATGAACGAAGACAAACGTTGCCGTCCTATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTTCCCATGGGTGCCAATATTAGACTGAGACCTGGAAAATCTCGCACTGCTGGCAATGAGGAGAATCGAAGCCAAGGGAGCCCTTCAACTTTGTCAAGTGGAGAAGACGCTAATGGGATAGACTCTTCAAAAAACACTTAA	2841	0.4108	MPFQIMDQRGVSASSHFFDDISFRSERNVGLQKPKSINDHYPQGNNGMVASPGSILNATPPLDVNAKVGLLVPQASLPEDSIHSTESSNCRPKSLSDACLQSAPTSYGLIGNKIVTNAAPCESSLFSSSMSEIFSQKLRLFGNDVRSDHLINADSPPEEEPYKSLEEMEADTIGNLLPDEDDLFSGVVDELGCSSHARTNDDFEDFDLFSSGGGMEMEGDEHLSSGKRISALDGDFGFFGGYKGKLPFVEQPSRTLFVRNINSNVDDSELKALFEQYGDIRTIYTASKHRGFVMISYQDLRAAQNAMQELQNRPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSPVLDDELKQIFGFYGEIKEIYEYPEMNNHKFIEFYDVRAAEAALRALNKIDISGKQIKLEPGHPSLMHQSRKGQEERDLGQSIIDNLSSRQKVPSGVIGSGCFENGYNQRFQSTVRQPLNAFMDNAFIHVNSGIHNTVRGAPAGKVSSVCESSSFIDAMNFASGSRFHPHSLPEYRDSLANGSPYNFSSSISNMANNIGAGATEASDGRHIQGMGSTGNLAEFNAGGNGIRPHHGLYHMWNSSNLQQQTSSSTMLWQKSPSFVNDASSPGLPQMSSFARTPPHMLRTPHMMDHHVGSAPVVTASPWERKNSYLGGSPEASGFRLGSLGSGGFHGSWQMHPLDFPSHNMFSHVGGNGTELTSNAGQNSPKQLSHVFPVRHPMSSMSKFDASNERMRNLYHRRNEANTNNVDKKLYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMIDPGQIIPFHQAFDGKKWEKFNSEKVASLAYARIQGKASLIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGANIRLRPGKSRTAGNEENRSQGSPSTLSSGEDANGIDSSKNT*	947

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso5g1704	946	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	254	327	IPR000504	GO:0003723
	Gso5g1704	946	CDD	RRM3_MEI2_like	779	864	IPR034454	-
	Gso5g1704	946	CDD	RRM1_MEI2_like	253	328	IPR034453	-
	Gso5g1704	946	SUPERFAMILY	RNA-binding domain, RBD	251	409	IPR035979	GO:0003676
	Gso5g1704	946	PANTHER	RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED	2	940	-	-
	Gso5g1704	946	Gene3D	-	248	337	IPR012677	-
	Gso5g1704	946	MobiDBLite	consensus disorder prediction	918	946	-	-
	Gso5g1704	946	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	2	940	-	-
	Gso5g1704	946	Pfam	RNA recognition motif 2	776	872	IPR007201	-
	Gso5g1704	946	Gene3D	-	338	433	IPR012677	-
	Gso5g1704	946	Coils	Coil	293	313	-	-
	Gso5g1704	946	SMART	rrm1_1	778	854	IPR000504	GO:0003723
	Gso5g1704	946	SMART	rrm1_1	255	323	IPR000504	GO:0003723
	Gso5g1704	946	SMART	rrm1_1	340	408	IPR000504	GO:0003723
	Gso5g1704	946	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	339	412	IPR000504	GO:0003723
	Gso5g1704	946	MobiDBLite	consensus disorder prediction	887	946	-	-
	Gso5g1704	946	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	256	320	IPR000504	GO:0003723
	Gso5g1704	946	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	341	406	IPR000504	GO:0003723
	Gso5g1704	946	SUPERFAMILY	RNA-binding domain, RBD	778	863	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso5g1704	Gso-Chr5	40293696	40304873	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso5g1704	251	405	Eukaryotic Initiation Factors Gene Family	AT3G16380	25.000	5.15e-08	54.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso5g1704	-		-	gmx:106798747	1878.99