Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1703 GTTGCCAAAGTGGATCGAAAACATGGAAAGAGACCACTTCCTTTGGAAGAAGAAGAGAAAGCGTTTCCGATTTATTCTTCTCGGTCCCAGCAAGACATATCGGCTGTGGTATCGGCTCTTGTTCAAGTCATTGGTGGCAATCCAGAACACAAAGATCCAACAACAGCGTCTCAGTCAAGTGTTGTTGGAAATGATTCAAATGAACAATCACAACCACCACAACATCAAGGAAACGTAAGAAGGCACTATAGAGGAGTGAGACAACGACCGTGGGGGAAGTGGGCATCGGAGATTCGAGACCCAAAGAAAGCAGCGAGAGTTTGGCTGGGAACCTTTGAAACTGCTGAGGCAGCTGCACTCGCTTACGATGAAGCAGCTCTCAGATTCAAAGGAACCAAAGCTAAGCTTAATTTTCCAGAAAGGGTTCATTTCTCTAAGGAATTTGGTTACCTCACTAATCGTCCATCATTGTTCCACGCCTCGGCGACGCCACTCAGTGATCAACATTCTCAAGTGTTTGGTGGCACTGCAACTAATAATGATGCCATGCCTCGTTTATATGGGACTGACGTCGTGTTTCTTTCTGCTGAACAAGACCTTCTACCGTTTTCCATGCAGTCTTCTACTTCTGAGCCTCCTAGGAAACCAACATGTGATTTGGATGGCAAAGACAAACTATGA 681 0.4567 VAKVDRKHGKRPLPLEEEEKAFPIYSSRSQQDISAVVSALVQVIGGNPEHKDPTTASQSSVVGNDSNEQSQPPQHQGNVRRHYRGVRQRPWGKWASEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGTKAKLNFPERVHFSKEFGYLTNRPSLFHASATPLSDQHSQVFGGTATNNDAMPRLYGTDVVFLSAEQDLLPFSMQSSTSEPPRKPTCDLDGKDKL* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1703 226 MobiDBLite consensus disorder prediction 1 30 - -
Gso5g1703 226 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Gso5g1703 226 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Gso5g1703 226 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Gso5g1703 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 18 185 - -
Gso5g1703 226 MobiDBLite consensus disorder prediction 51 77 - -
Gso5g1703 226 MobiDBLite consensus disorder prediction 204 226 - -
Gso5g1703 226 PANTHER DNA-BINDING DOMAIN 18 185 IPR044808 GO:0003700|GO:0009873
Gso5g1703 226 MobiDBLite consensus disorder prediction 1 23 - -
Gso5g1703 226 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Gso5g1703 226 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Gso5g1703 226 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Gso5g1703 226 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Gso5g1703 226 MobiDBLite consensus disorder prediction 44 86 - -
Gso5g1703 226 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1703 Gso-Chr5 40285849 40289432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1703 8 152 AP2-EREBP Transcription Factor Family AT5G61890 58.228 8.05e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso5g1703 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1703 - - gmx:100793410 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1703 5 40285849 40289432 Gso4g1702 4 47064904 47066126 PCT
Gso5g1703 5 40285849 40289432 Gso6g1386 6 13598311 13601143 PCT
Gso4g1702 4 47064904 47066126 Gso5g1703 5 40285849 40289432 PCT
Gso6g1386 6 13598311 13601143 Gso5g1703 5 40285849 40289432 PCT