Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1681 ATGGATAAGTATGAGGCTGTCAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCTAGGCTCATGAGGAACAAGGAGACCAAGGAGCTTGTTGCCATGAAATACATCGAGCGTGGCCAAAAGATTGATGAGAATGTGGCAAGAGAGATTATCAACCACAGATCCCTTCGGCACCCCAATATAATTCGCTTCAAGGAGGTGGTTTTGACCCCCACCCATTTAGCCATAGTGATGGAGTATGCGGCTGGAGGAGAGCTCTTTGAGAGGATATGCAATGCTGGAAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATTTCTGGTGTACATTACTGTCATGCCATGCAAATATGTCACAGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGTCCTGCACCCCGTCTGAAAATTTGTGACTTTGGTTATTCCAAGTCATCATTGCTTCATTCTCGACCAAAATCAACTGTTGGAACTCCAGCTTATATAGCACCAGAGGTTCTTTCCAGGAGGGAGTATGATGGCAAGTTGGCTGATGTATGGTCATGTGGAGTGACTCTTTATGTCATGCTGGTTGGAGCTTACCCCTTTGAGGATCAGGATGACCCTAGGAATTTTAGGAAAACAATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCCCAAGACTGCAGACACCTCCTTTCTCGTATATTTGTAGCAAATCCATTAAGGAGAATATCTCTTAAGGAAATTAAGAACCACCCATGGTTTTTAAAGAATCTTCCAAGAGAGCTAACAGAATCAGCTCAAGCTGTCTATTACCAGAGAGGCAATCCAAGCTTTTCTGTTCAAAGTGTGGAGGAGATCATGAAAATTGTGGGAGAGGCAAGGGACCCTCCTCCAGTATCTAGGCTTGTCAAAGGTTTTGGCTGGGAGGGCAAAGAAGATGAAGGGGAAGAAGACGTGGAGGAAGAGGAGGATGAAGAAGACGAGTATGACAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTTCAAATCAGTTAA 1056 0.4384 MDKYEAVKDLGAGNFGVARLMRNKETKELVAMKYIERGQKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRISLKEIKNHPWFLKNLPRELTESAQAVYYQRGNPSFSVQSVEEIMKIVGEARDPPPVSRLVKGFGWEGKEDEGEEDVEEEEDEEDEYDKRVKEVHASGEFQIS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1681 351 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2H 2 344 - -
Gso5g1681 351 SUPERFAMILY Protein kinase-like (PK-like) 2 291 IPR011009 -
Gso5g1681 351 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1681 351 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Gso5g1681 351 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1681 351 PANTHER SERINE/THREONINE KINASE 2 344 - -
Gso5g1681 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Gso5g1681 351 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gso5g1681 351 Coils Coil 318 345 - -
Gso5g1681 351 MobiDBLite consensus disorder prediction 310 351 - -
Gso5g1681 351 MobiDBLite consensus disorder prediction 318 335 - -
Gso5g1681 351 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Gso5g1681 351 CDD STKc_SnRK2 3 259 - -
Gso5g1681 351 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1681 Gso-Chr5 40090936 40094991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1681 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 42.593 4.49e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Gso5g1681 Pkinase 5.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1681 K14498 - gmx:100804018 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1681 5 40090936 40094991 Gso5g1681 5 40090936 40094991 ECH
Gso5g1681 5 40090936 40094991 Gso8g0043 8 403224 407292 GST
Gso5g1681 5 40090936 40094991 Gso4g1733 4 47409563 47413155 PCT
Gso5g1681 5 40090936 40094991 Gso6g1353 6 13283047 13286632 PCT
Gso4g1733 4 47409563 47413155 Gso5g1681 5 40090936 40094991 PCT
Gso6g1353 6 13283047 13286632 Gso5g1681 5 40090936 40094991 PCT