Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1677 ATGCCACTTTTAAGGAGAAAACCTTTTTCCTTGGCCGAGCCTCCTGAGGATTTGAAGCCAGATGAGCCTGTTTACCAAATTCGATTTACAAAAGAAATCTTTCAAGATTATCATGATTATTTGAAGCGATTGAATCTATACCGCCAGAGGGTTTGGATGTGTAAAGTCACTGGAAAAACTGGCTTGACATATGAAGAGGCTTTGGTGTCTGAACAACTTGCTACCGAGAAAGTTCAACAGTTTCCTAAAGAATTAATGACTATTGCTTTAAGGATTATTCAATACAGTATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGGTGAGAAATTGCAGGAACAGTTGTTTGTGGGTGCTGAACTACATTGGAAAAAGGATGATGGAGTTCATCCATGCAAAATATTAAAAGTCATTCAGAAAGGAGTTGACACAGTCTCTTATGAGGTAGCTTGGCTTGACAAAAACAAGAATATAAGAGAACAAGCAGAAGTCAGTGCAGAAGATTTGGTGCATAAGAAGCCGCTTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGTGAGTCTACATATCGGAATGCCCCTTGGGTTTTACATGATGAACTGGCTAAAAATCATGGAATATCAACTGACATTCCTGAAGAGTTAAGAGGAAGGGTTTTTTACAAAGATGGACTTTTAGTTTGCTCCAAGAAAAGGAAACACGAGGAATCACGGGAGGACACCGATACCTGTAAAAAGAAGTTGGATGGTGCACAAGTCGATGATTCTGTCCAAGAGAAAGAAAATGGTCAACCCAAGGATGCAGCAATCAAATACCCCATTGATGATCTATTGGTGATCCCTAGTCCAGATGATCCTGTTTTCACTGATCGTCCTTCTCCAGCAAAAAGCTTCAATATTCCAATGAGTTGTGTAGGGGAACTCTTGATGGTTTGGGATTTTCTTAGTTCCTTTGGTAGACTGTTGCAGCTGAGCCCCTACTCTCTAGAAGATTTTGAAATTGCAATCTGTCATAAGGATAGCAATGTGGCTCTCGTTGTGGAATCTCATGCAGCACTTTTTCGACTTCTCATCAAAGATGACGATGAATACTCTTTGGCTGTGAAGAATCGAAAATTGAAGTCTAAGATTACAACAAATAATTGGACAGAATATTTATGTCATTTTCTAGAGATGATCAATATTCCTGAACTATGGCAACATAAAACAACTATAAAACGGGGACATTATGGCCTTGTAGATGCCAGTGCTAAATTAAGAATCTTAGGCGAATTGGTCAATCGGGCCCTTGAAACTGCAATTTTCAGGGGAAAGTTAGATGAGATTATTGAACAGCGACAGGCACTTGGGGCCACTAGAAGGGGAGAAGCTTTGGAAAATGGTAGAAGGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGTCGGAAAGCAATGGATTTGTGGATGGGTATCATCTGAACGGTGAAAATGTCCTAGCAAACAATAGTATACAAAATGGAGATGTGGGAGAGAAAAGAATTATAGAGATAGAACCATCTGGGCAAAATGATCCATTGGGCAGAAGTGGGATCAAGCATTTAAATTCTGCTCCAAAAAAGACACTTAAGAAGTTAAATTCAGAGCTGAAAGAACCAACGGAAAATGGAAAAGAATTATCCAGAAAGGAATCACCAAAACAGTTGAAGGCTGATAAGGATTCATCAGAGAAGAATAGTGACGAACAGAGGAAAGAATATTTCGAACGGGAGATGGAGAAGCGATTTATTCGTAGGAGCCCATTAGGTAAGGACAGAGATTACAATAATTATTGGTGGTTCTGTCGTTATGGGAGGATATTTGTTGAAAGCTGTGACTCCAAGAAGTGGGGATACTACAGCAGTAAGGAAGAGCTTGATGCATTGATGAGTTCACTGAATTGCAAGGGTGAGCGGGAAAGGGTACTGCGAAAGCAGCTAGAAAAATATTATAGTACAATATGCTCAGAACTCCAGAAAACATCTAAGGATTTGATGCACAGGTTTGTAGATGAGTCTGTTCTTCGTAGGTCTACTCGTGTTAGAGCTCAACCAGGGCAGAACCCCTCCGATGCTTGCCTCAGATATAAAAACAAGTACCATAAAGAAGAATAG 2130 0.3977 MPLLRRKPFSLAEPPEDLKPDEPVYQIRFTKEIFQDYHDYLKRLNLYRQRVWMCKVTGKTGLTYEEALVSEQLATEKVQQFPKELMTIALRIIQYSMLPLKDLADSIGEKLQEQLFVGAELHWKKDDGVHPCKILKVIQKGVDTVSYEVAWLDKNKNIREQAEVSAEDLVHKKPLFSRNILKSFIRESTYRNAPWVLHDELAKNHGISTDIPEELRGRVFYKDGLLVCSKKRKHEESREDTDTCKKKLDGAQVDDSVQEKENGQPKDAAIKYPIDDLLVIPSPDDPVFTDRPSPAKSFNIPMSCVGELLMVWDFLSSFGRLLQLSPYSLEDFEIAICHKDSNVALVVESHAALFRLLIKDDDEYSLAVKNRKLKSKITTNNWTEYLCHFLEMINIPELWQHKTTIKRGHYGLVDASAKLRILGELVNRALETAIFRGKLDEIIEQRQALGATRRGEALENGRRRREEKERLKAESESNGFVDGYHLNGENVLANNSIQNGDVGEKRIIEIEPSGQNDPLGRSGIKHLNSAPKKTLKKLNSELKEPTENGKELSRKESPKQLKADKDSSEKNSDEQRKEYFEREMEKRFIRRSPLGKDRDYNNYWWFCRYGRIFVESCDSKKWGYYSSKEELDALMSSLNCKGERERVLRKQLEKYYSTICSELQKTSKDLMHRFVDESVLRRSTRVRAQPGQNPSDACLRYKNKYHKEE* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1677 709 MobiDBLite consensus disorder prediction 512 577 - -
Gso5g1677 709 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Gso5g1677 709 Pfam DDT domain 303 360 IPR018501 -
Gso5g1677 709 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Gso5g1677 709 SMART testlast3 302 363 IPR018501 -
Gso5g1677 709 ProSiteProfiles DDT domain profile. 302 363 IPR018501 -
Gso5g1677 709 MobiDBLite consensus disorder prediction 453 485 - -
Gso5g1677 709 Coils Coil 458 478 - -
Gso5g1677 709 MobiDBLite consensus disorder prediction 536 577 - -
Gso5g1677 709 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 589 655 IPR028941 -
Gso5g1677 709 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 707 - -
Gso5g1677 709 MobiDBLite consensus disorder prediction 456 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1677 Gso-Chr5 40058225 40065073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1677 575 665 Homeobox Transcription Factor Family AT5G44180 36.000 8.78e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gso5g1677 WAC_Acf1_DNA_bd 3.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1677 - - gmx:100801902 1425.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1677 5 40058225 40065073 Gso5g1677 5 40058225 40065073 ECH
Gso5g1677 5 40058225 40065073 Gso8g0039 8 371810 377742 GST
Gso5g1677 5 40058225 40065073 Gso6g1348 6 13245477 13251266 PCT
Gso6g1348 6 13245477 13251266 Gso5g1677 5 40058225 40065073 PCT