Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1669 ATGGCTACTCCTCCGGTGAATTCGTTGCCAATAGCATACCAAGCATGGACAAGCCTGGGAGTCCCAGATTGGTTGAACAAAGGAGACAACGCATGGCAAATGGTGTCAGCCACCTTGGTTGGGATTCAAAGCATGCCGGGCCTCGTCATCCTCTACGGAAGCATCGTCAAAAAGAAATGGGCCGTCAACTCTGCCTTCATGGCCCTCTACGCTTTTGCGGCGGTTATCATCTGTTGGGTGGCGTGGGCCTACAAGATGTCGTTTGGGGAGGAGCTGCTGCCGTTTTGGGGCAAAGCCGGGCCCGCGTTGGGCCAGAGGTTTCTGATAAAGCAGGCGGGCCTGCCCGCCACGCCGCATTATTTTAGAAACGGTGGTGGTTTGGAGACGGCGGAGATAACGCCGTTTTATCCGATGGGTACTATGGTATGGTTTCAGTGTGTTTTTGCGGCTATTGCGGTTGTTATATTGGCTGGGTCGGTGCTGGCTAGGATGAACTTCAAGGCGTGGATGATGTTTGTGCCGCTTTGGCTTACTTTCTCTTACACCATTGGGGCGTTTAGCTTGTGGGGTGGAGGGTTCTTGTTCCACTGGGGCGTTATGGACTACTCTGGTGGTTATGTTATTCATCTCTCTTCCGGGATTGCTGGCTTCACTGCTGCTTATTGGGTGGGGCCAAGATCGAAGAAGGACAGAGAGAGATTCCCGCCAAACAATGTGTTGCTAACGTTGGCGGGGGCAGGGCTACTATGGATGGGATGGGCAGGTTTCAACGGCGGAGATCCGTACGCGGCAAACACGGACTCGTCGATGGCGGTGCTTAACACCAACATTTGCGCCGCCACCAGCCTCCTCGTATGGACGTGGTTGGACGTTATTTTCTTCAAGAAACCCTCAGTTATTGGAGCCGTTCAGGGCATGATAACTGGCCTTGTTTGCATCACTCCCGGAGCTGGTCTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTTCTTTCAGGCAGTGTCCCATGGTTCAGCATGATGGTATTAGGGAAAAAGCTGAAATTGTTTCAAATGGTTGATGACACCCTTGCTGTGTTCCACACTCATGCTGTGGCTGGCCTTCTTGGAGGCATACTCACTGGCCTATTTGCCGAACCTCGTCTGTGTGCACTCTTTCTACCTGTCACCAACTCCAAAGGAGGAGTCTATGGAGGCCCTGGTGGAGTCCAAATCCTTAAACAAATCGTGGGAGCTTTGTTCATCATTGGGTGGAACCTTGTGGTCACTTCAATTATTTGTGTGGTTATTAGTTTCATAGTTCCACTTAGAATGACAGAGGAAGAGCTTCTCATTGGAGATGATGCGGTTCATGGGGAAGAGGCTTATGCTCTGTGGGGTGATGGAGAGAAACTTAGCATCTACAAAGATGATACCACTCACCATGGAGTTGTGTCTAGTGGTGCCACTCAAGTGGTCTAG 1461 0.5147 MATPPVNSLPIAYQAWTSLGVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVAWAYKMSFGEELLPFWGKAGPALGQRFLIKQAGLPATPHYFRNGGGLETAEITPFYPMGTMVWFQCVFAAIAVVILAGSVLARMNFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWMGWAGFNGGDPYAANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFSMMVLGKKLKLFQMVDDTLAVFHTHAVAGLLGGILTGLFAEPRLCALFLPVTNSKGGVYGGPGGVQILKQIVGALFIIGWNLVVTSIICVVISFIVPLRMTEEELLIGDDAVHGEEAYALWGDGEKLSIYKDDTTHHGVVSSGATQVV* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1669 486 PANTHER AMMONIUM TRANSPORTER MEP2 18 479 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gso5g1669 486 TIGRFAM amt: ammonium transporter 29 456 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gso5g1669 486 ProSitePatterns Ammonium transporters signature. 201 226 IPR018047 GO:0008519|GO:0016020|GO:0072488
Gso5g1669 486 SUPERFAMILY Ammonium transporter 24 438 - -
Gso5g1669 486 PANTHER AMMONIUM TRANSPORTER 18 479 - -
Gso5g1669 486 PRINTS Rhesus blood group protein signature 145 161 IPR002229 GO:0005887
Gso5g1669 486 PRINTS Rhesus blood group protein signature 240 258 IPR002229 GO:0005887
Gso5g1669 486 PRINTS Rhesus blood group protein signature 271 293 IPR002229 GO:0005887
Gso5g1669 486 PRINTS Rhesus blood group protein signature 326 344 IPR002229 GO:0005887
Gso5g1669 486 Pfam Ammonium Transporter Family 31 456 IPR024041 GO:0008519|GO:0016020|GO:0072488
Gso5g1669 486 Gene3D Ammonium transporter AmtB like domains 12 459 IPR029020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1669 Gso-Chr5 39974805 39980074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1669 138 475 Inorganic Solute Cotransporters AT2G38290 71.598 1.60e-168 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1669 K03320 - gmx:100785993 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1669 5 39974805 39980074 Gso5g1669 5 39974805 39980074 ECH