Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1659 ATGGGGGACGGAAGTGGGAGCCGGTGGAGCAGGGCGGAGTGGGTGCAGCAGTACGATCTCTTAGGAAAAATCGGCGAAGGCACTTACGGCCTCGTCTTCCTCGCCCGAACCAAATCCCCCGTTGGCACTCCCTCCAAATCCATTGCCATAAAAAAGTTCAAGCAATCCAAGGACGGCGACGGCGTCTCCCCCACCGCCATCCGCGAAATCATGTTGCTGAGGGAGATTACGCACGAGAACGTCGTCAAGCTCGTCAACGTACACATCAACCACGCCGACATGTCTCTCTACCTCGCCTTCGATTACGCCGAGCACGATCTCTATGAAATTATTAGGCATCACAGGGACAAACTCAACCATTCCATTAATCAGTACACTGTTAAGTCTTTGCTCTGGCAGTTGCTCAATGGACTAAGCTATCTGCACAGTAATTGGATGATACATCGTGATTTGAAGCCATCGAATATATTGGTTATGGGTGAAGGAGAGGAACATGGAGTTGTTAAGATTGCTGACTTTGGACTTGCGAGGATATATCAAGCTCCTCTGAAGCCGTTATCTGACAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTATGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTCAAAGCTACATCAAATCCCTTTCAGCTTGACCAACTTGACAAGATATTTAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAGTCTTCCACATTGGCAACAAGATGTGCAACATATACAAGGACACAAATATGACAATGCCGGTCTCTATAATGTTGTACACCTGTCTCCAAAAAGCCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGTAAGCGTTTAACAGCAGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCATTACCTGGACGAAATGCACTTGTACCCTGCCAACTTGGAGAGAAAATTGTAAATTATCCCACTCGTCCAGTGGACACTACAACTGATCTTGAAGGGACAACCAATCTGCCACCTTCACAAACGGTAAATGCAGTTTCTGGTAGCATGCCTGGTCCTCATGGGTCAAATAGATCTGTGCCTCGGCCAATGAATGTTGTTGGAATGCAAAGACTGCCCCCTCAAGCAATGGCAGCTTATAATCTCTCATCTCAGGCAGCCATGGGAGATGGAATGAATCCTGGGGATATCTCAAAGCATCGAGGTGTTCCACAGGCCCATCAGCCACAACAGTTGAGAAGGAAGGAGCAAATGGGGATGCCGGGATACCCTGCACAACAGAAGTCAAGACGATTATAA 1395 0.4688 MGDGSGSRWSRAEWVQQYDLLGKIGEGTYGLVFLARTKSPVGTPSKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLSYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSDNGVVVTIWYRAPELLLGAKHYTSAVDMWAMGCIFAELLTLKPLFQGAEVKATSNPFQLDQLDKIFKVLGHPTLEKWPSLASLPHWQQDVQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRLTAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDTTTDLEGTTNLPPSQTVNAVSGSMPGPHGSNRSVPRPMNVVGMQRLPPQAMAAYNLSSQAAMGDGMNPGDISKHRGVPQAHQPQQLRRKEQMGMPGYPAQQKSRRL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1659 464 PANTHER CELL DIVISION PROTEIN KINASE 8 463 - -
Gso5g1659 464 MobiDBLite consensus disorder prediction 361 386 - -
Gso5g1659 464 SUPERFAMILY Protein kinase-like (PK-like) 13 330 IPR011009 -
Gso5g1659 464 Gene3D Transferase(Phosphotransferase) domain 1 102 345 - -
Gso5g1659 464 ProSitePatterns Protein kinases ATP-binding region signature. 24 52 IPR017441 GO:0005524
Gso5g1659 464 MobiDBLite consensus disorder prediction 418 464 - -
Gso5g1659 464 SMART serkin_6 18 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1659 464 CDD STKc_CDK8_like 17 329 - -
Gso5g1659 464 Pfam Protein kinase domain 18 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1659 464 ProSiteProfiles Protein kinase domain profile. 18 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1659 464 Gene3D Phosphorylase Kinase; domain 1 5 101 - -
Gso5g1659 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Gso5g1659 464 MobiDBLite consensus disorder prediction 361 395 - -
Gso5g1659 464 PANTHER CYCLIN-DEPENDENT KINASE E-1 8 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1659 Gso-Chr5 39860088 39872622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1659 11 464 Core Cell Cycle Gene Families AT5G63610 76.087 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Gso5g1659 Pkinase 4.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1659 K02208 - gmx:100794990 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1659 5 39860088 39872622 Gso5g1659 5 39860088 39872622 ECH
Gso5g1659 5 39860088 39872622 Gso8g0024 8 213966 224716 GST