Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1656 ATGCCAGGAGAACTCCAATTACCACCCGGGTTCAGATTCCACCCCACTGACGATGAGCTTGTGAATCACTACTTGTGTAGAAAGTGTGCTGCACAAACCATTGCTGTTCCCATCATCAAAGAAATCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGAGATGGCTCTTTACGGTGAGAAAGAGTGGTACTTTTTCTCTCCTCGAGACCGAAAATACCCAAACGGTTCGAGACCGAACCGGGCTGCCGGAAGCGGGTACTGGAAGGCTACCGGAGCTGACAAACCGATCGGAAAACCGAAAGCCCTTGGAATCAAGAAGGCCCTCGTGTTCTACGCGGGCAAAGCCCCAAAGGGAGTGAAGACCAATTGGATCATGCACGAATATCGCTTAGCCAACGTCGACAGATCCGCCTCAAAAAAAAACACCACCACCAACAACTTGAGGCTTGATGATTGGGTTTTGTGCCGAATTTACAACAAGAAAGGGAAGATTGAGAAGTACAATGGTGTTGCGGTGGTGGATCAGAAAGTGGCCAAGTTATCAGAAGAGGAGGTTCAGTTCCAGCACGAGACCAAGCCTCAGATCAAGATGTACGGCCACGATGATTTCAGGAACGACCAATTGTACATGGACACGTCGGATTCGGGGCCCAGGTTGCACACGGACTCCAGCTGCTCCGAGCACGTGGTTTCGCCCGATGGCACGTGCGAGAAGGAGGTGCAGAGCGAGCCCAAGTGGAATGATCTTGAGTTGGGCCCCGACCCAGCCTTGGGCTTCGATTTTAATTTCATGGACCTGACCTCAGATGACGCTTTTGCCCCTCAGGTTCAATACCAAATCAACCATCTCTCACCGTGGCAAGAAATGTTCACGTACCTACCAAAGACATTTTGA 897 0.505 MPGELQLPPGFRFHPTDDELVNHYLCRKCAAQTIAVPIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNTTTNNLRLDDWVLCRIYNKKGKIEKYNGVAVVDQKVAKLSEEEVQFQHETKPQIKMYGHDDFRNDQLYMDTSDSGPRLHTDSSCSEHVVSPDGTCEKEVQSEPKWNDLELGPDPALGFDFNFMDLTSDDAFAPQVQYQINHLSPWQEMFTYLPKTF* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1656 298 ProSiteProfiles NAC domain profile. 7 161 IPR003441 GO:0003677|GO:0006355
Gso5g1656 298 MobiDBLite consensus disorder prediction 215 231 - -
Gso5g1656 298 MobiDBLite consensus disorder prediction 215 237 - -
Gso5g1656 298 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Gso5g1656 298 PANTHER NAC TRANSCRIPTION FACTOR 56 5 274 - -
Gso5g1656 298 Gene3D NAC domain 16 166 IPR036093 GO:0003677|GO:0006355
Gso5g1656 298 SUPERFAMILY NAC domain 4 161 IPR036093 GO:0003677|GO:0006355
Gso5g1656 298 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1656 Gso-Chr5 39843607 39845405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1656 5 298 NAC Transcription Factor Family AT1G01720 62.752 2.34e-123 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso5g1656 NAM 1.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1656 - - gmx:100170751 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1656 5 39843607 39845405 Gso5g1656 5 39843607 39845405 ECH