Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1649 ATGCCTACACTCAACAGAAATGCCTTGTGGGAGTTTTTGATCATTCCGCAGGAGGGGCTTCCTGAATCAGAAACATCATCATCTTTGGATACCCGAGATTGGGGTACCGTGGGATTGCTTTGCCTACCATGGCTGTTTTGGTTGCTCACTTTCCTATACAGAATCTTCTCAAGGATTTTTGGATGTAGAGTTAGTGTTGGTGGAGGAAATTGGGTTCCTACTGCAAATGCAGACGTGGAGGTTGCAGTTGCATCTCATGCAAAAGGTGACAATCTGTTAAATAGGGCATCATCTGTTGCTTCACACGAAAGTGAAATGACATTTGCAAAATCTATGTCAGCACCGTCGTTAAAACCTGCCTCACTCGATTATTACTATTATCATCAGGGCAAAAAGTACAGGGGCGGCATCGCCTCTGCAAGGTTGTGCATGAAGATGCAGGCAGAAGTGTGGCGGTTGACGAGTCCAAGTTTGGTGAACTCTAAGTTTGAGCTGCTGTCGGTAGAGAGGAAGCCGAGGCCGAAGCATGTTGAGGGTCTGGCTGGAGGGAAAAAAAGTTGTGATGATGATGGTTCAGAGTTTGGGAGTGCAGGTTCTTCGTTTTCTCCACAACAGGAGAGCTTGTCAGAGGGTACTAAAAATGGTGATGGGGATGGTATTGAGTATGATGCAGATGATTCTGTTCAAGAGTTGGATCATTTTGAACCTGAGAATGATGGTTCTATAACTTTGACTGGCCCCAGATCGACTTATAAGTTGCAGGCTAGAATTGCGAATATGTTGTATCCGCATCAGCGGGAGGGGTTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGAAAAGGTGGAATCTTGGGGGATGACATGGGTTTGGGGAAAACAATGCAGATGTGTGGCTTTCTAGCTGGACTGTTTCATTCTCGTTTAATTAGAAGAGCATTGATTGTAGCACCCAAAACCTTATTGCCCCATTGGATCAAAGAGTTGTCAGCTGTGGGTCTATCCGAGAAGACAAGAGAATATTTTGGAACCTCTACAAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGAGTTCTTCTCACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTACAGGGGAATAATTATTTTGATGATGAGGATAATGAAGAAGGTGTAACATGGGACTACATGATACTTGATGAGGGACACCTTATAAAGAACCCTAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATTGCATTATCATTAGCGGCACACCTTTGCAAAATAATCTGAAGGAGTTGTGGGCATTGTTCAATTTCTGTTGCCCAGAGTTGCTTGGTGACCACGAATGGTTCAAAGAAAGATTTGAAAATCCCATACTTCGTGGAAATGACAAACATGCTTCTTACAGGGAGAAGCGTGTTGGTTCATCTGTAGCAAAGGAACTAAGAGATTGTATTCATCCTTACTTTTTGAGACGTTTGAAGAGTGAGATTTTCAATCAAGATGATGAGAAAACAACTACAAAACTTTCTCAGAAACAGGAGATCATTGTGTGGCTCCGACTGACCAGCGTTCAGCGGCATCTTTATGAAGCATTTTTGAATAGTAAGATTGTTCTCTCAGCAATTGATGGCTCACCACTGGCTGCCATTACGATTTTGAAGAAAATATGTGATCATCCACATCTGTTGACAAAGCGGGCTGCTGAGGGTGTGTTGGAAGGGATAGACTCAATGCTAAAGCCAGAAGAGGCTAATGTTGCAGAAAAATTGGCAATGCACATAGCAGATGTTGCAGGCAAAGATAAGTTTAAAGACAAGCAAGATGTGTCATGCAAAATTTCCTTCATTATGTCATTATTGGATAATTTGATCCCAGAAGGGCATTGTGTGCTTATATTTTCTCAGACTCGCAAGATGCTTAATCTTATTGAGGAATGCCTAGTATCTGAAGGTTATGATTTTTTACGAATTGATGGCACAACAAAAGCCAGTGACAGACTAAAGATTGTTAATGATTTTCAAGAAGGTTTTGGAGCTCCTATATTTCTCTTGACATCTCAGGTTGGTGGTTTAGGACTAACACTTACAAGAGCAGATCGTGTGATTGTAGTTGATCCTTCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGGGCATATCGAATTGGTCAAAAGAAAGATGTTCTGGTATATAGACTGATGACATGCGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATACAAGGGAGGATTATTCAAAATTGCTACTGAACATAAAGAACAAATTCGGTACTTTAGCCAGCAGGATCTCAGGGGGCTTTTTAGCCTTCCAAAAGAAGGATTTGATGTATCTGTTACCCAAAGGCAATTGAATGAGGAGCACGATCGTCAACATACAGTTGATGACTCTTTCAAAGCACATATAAAGTTTTTGAAAAGTCAGGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCCAAGGCAGAGCCAGTTCGAGCTGATCATGAGGATGATGAAGTTACAAGGAATCATAGGGTGAAATATGTTGGAACTTCGAGATCATCTTCAAATGAGCATGTTGCTTATGGCCCGGAGTTTGCATTTAATCCTAAGGATGTTGGGTTAAGCAAAAAAGGTTCTTCTCCTAGCAGTGCTGGTAAATTGACCGAGTCAGAAATCAAGGATAAAATTAAGAGTATCTCTCAAACACTCTCAAATATGGCCTGGGCTTCTAAATTCCTGGCAAGGGCGAGAAACTAA 2790 0.4176 MPTLNRNALWEFLIIPQEGLPESETSSSLDTRDWGTVGLLCLPWLFWLLTFLYRIFSRIFGCRVSVGGGNWVPTANADVEVAVASHAKGDNLLNRASSVASHESEMTFAKSMSAPSLKPASLDYYYYHQGKKYRGGIASARLCMKMQAEVWRLTSPSLVNSKFELLSVERKPRPKHVEGLAGGKKSCDDDGSEFGSAGSSFSPQQESLSEGTKNGDGDGIEYDADDSVQELDHFEPENDGSITLTGPRSTYKLQARIANMLYPHQREGLKWLWSLHCLGKGGILGDDMGLGKTMQMCGFLAGLFHSRLIRRALIVAPKTLLPHWIKELSAVGLSEKTREYFGTSTKLREYELQYILQDKGVLLTTYDIVRNNSKSLQGNNYFDDEDNEEGVTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHCIIISGTPLQNNLKELWALFNFCCPELLGDHEWFKERFENPILRGNDKHASYREKRVGSSVAKELRDCIHPYFLRRLKSEIFNQDDEKTTTKLSQKQEIIVWLRLTSVQRHLYEAFLNSKIVLSAIDGSPLAAITILKKICDHPHLLTKRAAEGVLEGIDSMLKPEEANVAEKLAMHIADVAGKDKFKDKQDVSCKISFIMSLLDNLIPEGHCVLIFSQTRKMLNLIEECLVSEGYDFLRIDGTTKASDRLKIVNDFQEGFGAPIFLLTSQVGGLGLTLTRADRVIVVDPSWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFKIATEHKEQIRYFSQQDLRGLFSLPKEGFDVSVTQRQLNEEHDRQHTVDDSFKAHIKFLKSQGIAGVSHHSLLFSKAEPVRADHEDDEVTRNHRVKYVGTSRSSSNEHVAYGPEFAFNPKDVGLSKKGSSPSSAGKLTESEIKDKIKSISQTLSNMAWASKFLARARN* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1649 929 Gene3D - 517 817 IPR027417 -
Gso5g1649 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 498 IPR027417 -
Gso5g1649 929 SMART helicmild6 647 730 IPR001650 -
Gso5g1649 929 PANTHER OS04G0692700 PROTEIN 232 888 - -
Gso5g1649 929 Pfam Helicase conserved C-terminal domain 618 730 IPR001650 -
Gso5g1649 929 Gene3D - 237 497 IPR038718 -
Gso5g1649 929 MobiDBLite consensus disorder prediction 175 191 - -
Gso5g1649 929 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 448 IPR014001 -
Gso5g1649 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 793 IPR027417 -
Gso5g1649 929 MobiDBLite consensus disorder prediction 881 901 - -
Gso5g1649 929 Pfam SNF2-related domain 264 568 IPR000330 GO:0005524|GO:0140658
Gso5g1649 929 SMART ultradead3 257 459 IPR014001 -
Gso5g1649 929 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 621 780 IPR001650 -
Gso5g1649 929 CDD SF2_C_SNF 610 741 - -
Gso5g1649 929 PANTHER SNF2/RAD54 FAMILY MEMBER 232 888 - -
Gso5g1649 929 MobiDBLite consensus disorder prediction 193 212 - -
Gso5g1649 929 MobiDBLite consensus disorder prediction 175 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1649 Gso-Chr5 39764690 39775442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1649 261 784 RAD5 or RAD16-like Gene Family AT1G02670 24.696 1.08e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso5g1649 SNF2_N 1.2e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1649 K20093 - gmx:100781188 1842.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1649 5 39764690 39775442 Gso8g0015 8 128597 136420 GST