Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1645 ATGGAAGATGAGAGCCATAATAACACTTTGCCAAATGGATTCAACACAGGAAGCCCCGAAAGTCCTTTCTTAAAGACAAGCACCACCACCACACAACACAACAAAGAACAGGACCGATTTCTCCCTATAGCCAACGTGGGAAGAATCATGAAAAAAGTGATTCCCCCCAACGGCAAAATCTCAAAGGACGCAAAAGAGACAGTTCAAGAATGCGTTTCGGAGTTCATTAGTTTCGTGACCGGGGAAGCTTCTGACAAATGCCAAAGGGAAAAGAGAAAGACCATCAATGGAGACGATGTCATATGGGCCATCACAACCCTAGGCTTTGAGGATTACGTGGAACCCTTGAAAACTTACCTCCAGAAATATAAAGAGATAGAAGGAGAAAAACTTAGCATTCCAAAGCAAATGCGTTCTGAACAAAGGCTACAACAACACCATAATAATTATCATGACCAAAATAATCAACCATTCAATGGTGCATATGCCTCATCAAATCTCATTTCTCAGCCTCCTTATGTGCCCACTGATCAGAAGTTTTCTCTAACCTTCTCCCCAAACTCTATTCAGAGTCAGCTACGACAGCAAGACCAGATTGATTCTGTGGGGCACTGGTACGAATAA 624 0.4263 MEDESHNNTLPNGFNTGSPESPFLKTSTTTTQHNKEQDRFLPIANVGRIMKKVIPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDVIWAITTLGFEDYVEPLKTYLQKYKEIEGEKLSIPKQMRSEQRLQQHHNNYHDQNNQPFNGAYASSNLISQPPYVPTDQKFSLTFSPNSIQSQLRQQDQIDSVGHWYE* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1645 207 MobiDBLite consensus disorder prediction 1 35 - -
Gso5g1645 207 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Gso5g1645 207 SUPERFAMILY Histone-fold 37 146 IPR009072 GO:0046982
Gso5g1645 207 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 200 - -
Gso5g1645 207 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Gso5g1645 207 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Gso5g1645 207 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Gso5g1645 207 ProSitePatterns NF-YB/HAP3 subunit signature. 71 87 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso5g1645 207 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 200 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso5g1645 207 Gene3D Histone, subunit A 29 164 IPR009072 GO:0046982
Gso5g1645 207 MobiDBLite consensus disorder prediction 7 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1645 Gso-Chr5 39737047 39737821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1645 13 205 CCAAT-HAP3 Transcription Factor Family AT2G13570 60.784 4.42e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso5g1645 CBFD_NFYB_HMF 5.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1645 K08065 - gmx:100780647 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1645 5 39737047 39737821 Gso8g0010 8 92899 93564 GST