Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1633 ATGAACGAATCTCAAAACGCCATTCCCCATTTATTTAGATGCCCCATCAGTTTAGACTTGTTGGAAGATCCTGTGACTTTATGCACTGGCCAAACCTATGACAGATCAAACATAGAAAAATGGCTTGCTCTGGGTAACCTCACGTGTCCTGTCACAATGCAAAAGCTTCATGATCCATCCACTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAATGGCTTCAACTGTGTCACCAATTCGACCCTGCTAACCCTGAAGCTTCAACTATTGACTCCTTAGCTTCTCTGAAAAGCAACATTGAATCCCATGAAAGCAGCTTAGAAAACAAGTTCCAAGCACTTGGGAAAATCAGTCTCTTATCTGACGAGTATTGTTCCTTTAACAAATCATGCTTCTTCCAATTGGATTTCCTACCACAGCTTTTGGAACTAGTTTTTGGAACTCAAGTGTCACCAGAAATTGACATGAACTTCATAGAGCTAGCACTTTGTTGCATTAAAAAATTGCTGCCACTTGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGGGTCTAAATTAACCACGTTTGTGCTACTATTTGAAAAGGGTACTAACTCGGTTAAGACTAGCTTGTGCCGTGTTATAGAGTCATCATCATCATCCTCTGAGACAGAAGATTTATGTTCTACTCTTGGAAACTCTCACAAACTGGTGCACGAGATTGTTCAAGTTGTTAATCAAAATTACGAGGTTTCTGGGGATGCAATTAAAGCCATGTCAGCACTATGTTCGTTGCAATCCAACAGAGAGAGTTTGGTGAGAGGAGGAGCAATAGAAGAAATTATGAGATACATTACATCAGAAAGAAGAAACATGGCACCAGTGGCAATGAGAATAATAGAGAAAGTTATGTGGCTGAAAAGTGCTAAAGAGGCATTGGTAAAACACCCTAATGGTGTTCAAACTATGGTGAATATGGTTTTCAGGGTATCTGATCAAGAATGTAGTGAGAGTGCTGTTGAAGTGCTTTTAACTGTTTGTGGTGAATTTGAGCGTGCAAGAGAAGAAGCCATTGAGAGTGGAGTTTTGACTCGGTTGCTCTTGCTTCTGCAGAGTCAGTGTAGTAACACAACAAAATCAAAGGCAAGAATGCTGCTCAAATTGCTAAGATCCTAG 1161 0.4057 MNESQNAIPHLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLALGNLTCPVTMQKLHDPSTVPNHTLRHLIDQWLQLCHQFDPANPEASTIDSLASLKSNIESHESSLENKFQALGKISLLSDEYCSFNKSCFFQLDFLPQLLELVFGTQVSPEIDMNFIELALCCIKKLLPLGSLEPLNMIKDGSKLTTFVLLFEKGTNSVKTSLCRVIESSSSSSETEDLCSTLGNSHKLVHEIVQVVNQNYEVSGDAIKAMSALCSLQSNRESLVRGGAIEEIMRYITSERRNMAPVAMRIIEKVMWLKSAKEALVKHPNGVQTMVNMVFRVSDQECSESAVEVLLTVCGEFERAREEAIESGVLTRLLLLLQSQCSNTTKSKARMLLKLLRS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1633 386 Gene3D - 303 385 IPR011989 -
Gso5g1633 386 SUPERFAMILY RING/U-box 5 79 - -
Gso5g1633 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Gso5g1633 386 PANTHER WDSAM1 PROTEIN 7 386 IPR045185 GO:0061630
Gso5g1633 386 CDD RING-Ubox_PUB 12 54 IPR045210 -
Gso5g1633 386 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Gso5g1633 386 Gene3D - 89 300 IPR011989 -
Gso5g1633 386 PANTHER OS02G0542800 PROTEIN 7 386 - -
Gso5g1633 386 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Gso5g1633 386 SUPERFAMILY ARM repeat 223 382 IPR016024 -
Gso5g1633 386 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1633 Gso-Chr5 39661998 39663669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1633 8 370 U-box Gene Family AT3G19380 29.737 2.84e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1633 - - gmx:100805322 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1633 5 39661998 39663669 Gso8g0002 8 38452 40166 GST