Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1621 ATGGAGACCAACACTAGTGCATTCACAAATGTGAACAGCACTTGGAATCTTGAAAAGATGGAAACAAATGAACAACAAAATGATGAACATAATATTATTCTCCAAGTCCAAGACCCTATGGGTTCTGGGATTTGGCCCAGCAACAACTACCACAACCTTCTTCAAATGCATCAAACACCCAACACAACAACCTTATCCATCATAGCACCACCACCCTCCTCATCAGGGTTCCTTGGAGACATACTGGGTGTTCACAACCTAGAAGAAGATGAAGAGCCAGAAGAAGAGCTAGGTGCCATGAAGGAGATGATGTACAAGATCGCTGCTATGCAACCCGTGGACATCGACCCCGCCACGATTCGAAAACCAAAGAGAAGAAATGTTCGCATCAGTGATGACCCTCAGAGTGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAGAGACTCGTTCCCGGGGGAACCAAAATGGACACCGCTTCAATGCTTGATGAAGCCATTCGCTATGTTAAGTTCTTGAAGAGACAAATAAGGTTGCTTCAATCTATTCCTCAATCTTCAAATCCACCACAATGCATTGGTGTTGCTACTACTTCTCATCATGCTAGTACCTTGTTGTTAGCCCCTTCCTGTGATTGGCCTTTTGCACCAAATGTTCTTCCCAGTTCCACCGCCGCCACCGCCTCAATGGACATGTCGGCCGGACTGGGATTCGACGTCGGCCATGCTCATGCTTGTGATGGCTCCTCCAGCTTTAACCATCATGAGGTAATCAGTGAATAA 801 0.4707 METNTSAFTNVNSTWNLEKMETNEQQNDEHNIILQVQDPMGSGIWPSNNYHNLLQMHQTPNTTTLSIIAPPPSSSGFLGDILGVHNLEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPQSSNPPQCIGVATTSHHASTLLLAPSCDWPFAPNVLPSSTAATASMDMSAGLGFDVGHAHACDGSSSFNHHEVISE* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1621 266 Gene3D - 133 194 IPR036638 GO:0046983
Gso5g1621 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Gso5g1621 266 CDD bHLH_AtIND_like 131 188 - -
Gso5g1621 266 Pfam Helix-loop-helix DNA-binding domain 140 179 IPR011598 GO:0046983
Gso5g1621 266 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 23 250 IPR045843 GO:0003700|GO:0006355
Gso5g1621 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 193 IPR036638 GO:0046983
Gso5g1621 266 SMART finulus 136 185 IPR011598 GO:0046983
Gso5g1621 266 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 23 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1621 Gso-Chr5 39535057 39536800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1621 99 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 83.146 8.38e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g1621 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1621 - - gmx:100775296 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1621 5 39535057 39536800 Gso4g1797 4 48184285 48185593 PCT
Gso4g1797 4 48184285 48185593 Gso5g1621 5 39535057 39536800 PCT